Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2223 ATGCTTATTTATGCTCGTCAAACAGATCCTCTCCTTCATCGCGCGCGCTCTCTCTCTCTCTCTGCCCCCTCTCTGCAAGTAAGAAAAACGTCATGCTTCTGCAACAACAAAAAGCTTTCTTCTTCTTTTTCTTCCTTCTGGAGCTGCATAATCTGGTCATGGACTCTAGACGGTGTCGTTTCAGACCCACAGACCAGTTACGTGAAAATAGGGTGCAGCCAGTACAACGTCACTGACACGATTATCTTCCATGACAACCTGAAGTTGACATTCAGAGACTTGAAAGCACAGATCAAGAACCAAAGCAAACACTTCGCAACGTCGCAGGCAGTGAAGGGAAACAACCCAGCTTATAGTATTTTTCAGTGCAGAAACTACCTCTCCATCGTCGACTGCCTCGCTTGCTTCAGATTCGCCGCCCGGAATATTCGCAACTGCTCTTACGGCGCCACCGGTGCCCGTATCATCTATGAAGGATGCTTCCTCAGGTACGAGAGCAGTGGATTCTTTGATCAGAACACAGACGCTGGCAACAACATTGTCTGTGGGGCTAAAGCAAGAAACTCCACTGAACTTGCTTCAACAGTGGAACAAGTACTAACAGATCTGGAAACAGCAACACCAAAAATACCTGGTTTCTATGCAGCCACTAAAACGCAAGTGCCTAATAGTAACACTTCAATTTATGCCTTTGCTCAATGTCTTGAGACTCTCACTCAAAGTGGCTGCCAGGACTGCTTAAAAACTGGCTTAAAAAATTTCCAGATTTGTCTTCCCAACTCAAACGCCAAGACTTATGATGCTGGTTGTTTCATGAGATACTCCACCACTGCTTTCTTTTCTGATAATCAAACTACTAATATCAAGCACTTCTTGAAACAAGGAGGTTCAAGTAAGAAGAAGGCTATTATTGGTGGGGTTGTCGGAGGTGCATCTGTTATTTTGATTCTTCTTGCATTATTTGCTTTGCATAGACGATCACAGTTATCCAAGAGGAATCCTAGAGGAGACATTTTGGGAGCAACTGAGTTGAAAGGCCCTGTTAACTATAGGTATAAAGATCTCAAGGCAGCAACAAAAAATTTCAGTAAAGAAAATAAACTAGGAGAAGGAGGTTTCGGTGATGTTTACAAGGGAACTTTGAAAAATGGAAAAGTTGTTGCTGTCAAGAAATTGGCGTTAGGCCAATCCAAAGAGATGGAGAAAAATTTTGAAAGTGAAGTGAAGCTGATAAGTAATGTTCATCATCGAAATCTTGTTCGACTTTTGGGATGTTGCAGTAAAGGACAAGAGAGACTCCTAGTTTACGAGTACATGAAAAACAACAATGTTGGCCAATACTTATTCGGTAGAACTAAAGGTTCTCTCAGTTGGAAGCTACGTTATGGTGTAATTTTGGGTATTGCAAGGGGTTTGGCCTATTTACATGAGGAATTTCATGTTTGTATCATACATAGAGATATAAAAACTAGCAATATCCTCTTGGATGATGATTTCCAACCTAAAATTGCTGATTTTGGACTAGCAAGGCTTTTGCCAAGAGACCAATCTCATCTCAACACAAGATTTGCAGGAACAATGGGATACACAGCACCTGAATATGTAATGCATGGACAATTGTCAGAGAAAGTTGATACTTATAGCTATGGAGTTGTAGTCCTAGAAATTATAAGCGGACAAAAGAGTGGTGAAGTAAAGGGTAATAATGAAAGTGAATTACTCCTTCAAAAGGCTTGGAAACTGTATGAGAGAGGGTTGCATATAGAGTTTGTGGACAATACCTTAGACTCAAGTGAGTATGATGCAGAAGAAGTCAAGAAAATCATAGAAATTGGGTTACTCTGCACTCAAGCATCTCCTGCTGCAAGGCCAACAATGTCTGAGATTGTTGTTATGCTCAAAAGCAAAGGCTTAATGGACCACAAGAAACCCACTATGCCTGTCTATGTTGATCCTAATTGGAGGCCCAAAAGAGACACCTCTACGACTAATAGTTCATCTTCATCAAATGCTACTGTGTCCCAGTCCATTCTATCAGGAAGGTGA 2046 0.4145 MLIYARQTDPLLHRARSLSLSAPSLQVRKTSCFCNNKKLSSSFSSFWSCIIWSWTLDGVVSDPQTSYVKIGCSQYNVTDTIIFHDNLKLTFRDLKAQIKNQSKHFATSQAVKGNNPAYSIFQCRNYLSIVDCLACFRFAARNIRNCSYGATGARIIYEGCFLRYESSGFFDQNTDAGNNIVCGAKARNSTELASTVEQVLTDLETATPKIPGFYAATKTQVPNSNTSIYAFAQCLETLTQSGCQDCLKTGLKNFQICLPNSNAKTYDAGCFMRYSTTAFFSDNQTTNIKHFLKQGGSSKKKAIIGGVVGGASVILILLALFALHRRSQLSKRNPRGDILGATELKGPVNYRYKDLKAATKNFSKENKLGEGGFGDVYKGTLKNGKVVAVKKLALGQSKEMEKNFESEVKLISNVHHRNLVRLLGCCSKGQERLLVYEYMKNNNVGQYLFGRTKGSLSWKLRYGVILGIARGLAYLHEEFHVCIIHRDIKTSNILLDDDFQPKIADFGLARLLPRDQSHLNTRFAGTMGYTAPEYVMHGQLSEKVDTYSYGVVVLEIISGQKSGEVKGNNESELLLQKAWKLYERGLHIEFVDNTLDSSEYDAEEVKKIIEIGLLCTQASPAARPTMSEIVVMLKSKGLMDHKKPTMPVYVDPNWRPKRDTSTTNSSSSSNATVSQSILSGR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2223 681 SMART serkin_6 362 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g2223 681 MobiDBLite consensus disorder prediction 656 681 - -
Prci2g2223 681 Pfam Protein kinase domain 362 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g2223 681 Gene3D Phosphorylase Kinase; domain 1 328 438 - -
Prci2g2223 681 ProSiteProfiles Gnk2-homologous domain profile. 65 169 IPR002902 -
Prci2g2223 681 ProSiteProfiles Gnk2-homologous domain profile. 174 279 IPR002902 -
Prci2g2223 681 Gene3D - 178 279 IPR038408 -
Prci2g2223 681 Gene3D - 64 169 IPR038408 -
Prci2g2223 681 ProSiteProfiles Protein kinase domain profile. 362 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g2223 681 FunFam Cysteine-rich receptor-like protein kinase 2 177 279 - -
Prci2g2223 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Prci2g2223 681 ProSitePatterns Protein kinases ATP-binding region signature. 368 391 IPR017441 GO:0005524
Prci2g2223 681 Gene3D Transferase(Phosphotransferase) domain 1 439 646 - -
Prci2g2223 681 Pfam Salt stress response/antifungal 72 166 IPR002902 -
Prci2g2223 681 Pfam Salt stress response/antifungal 187 276 IPR002902 -
Prci2g2223 681 FunFam Cysteine-rich receptor-like protein kinase 2 439 641 - -
Prci2g2223 681 FunFam Cysteine-rich receptor-like protein kinase 2 328 438 - -
Prci2g2223 681 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 119 667 - -
Prci2g2223 681 CDD STKc_IRAK 368 634 - -
Prci2g2223 681 MobiDBLite consensus disorder prediction 647 681 - -
Prci2g2223 681 SUPERFAMILY Protein kinase-like (PK-like) 350 667 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2223 Prci-Chr2 17275361 17279749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2223 55 681 Receptor kinase-like Gene Family AT1G70520 36.578 1.77e-127 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Prci2g2223 Pkinase 5.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2223 - - gmx:100813585 842.802