LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g2189	ATGCTCGGACCTCATTGTAATCTGCTTCCGTTACTTACCTTCATAGTCTGGTCATGTTGCAGTCTCGACGGCGTCGCTTCAGAACCACAAATTCATCTTCTTAGTGCCCGGTGCAACCCACCTGACTTCTTTCTTGTTTCCAACTCGTCTATCCTCACGGAAAACCTAAACGCAACGTTTCGGGACATCAGAGGCCAAATCATGGATCAGAAGAAGCACTTCGCCACGGCACAGAAAGGCAATGGCGAAAATTTCCCAGTTTACACACTTTTTCAATGCAGAAACTACCTTTCCACCGCTGACTGTGCCGCCTGCTTCGACGTCGCTGCCGTCCAGATCCGCACCTGTTCTGCCGCCACGTCACCCTCTCCGGGTGCCTATGTCGTCTACGACGGCTGCTTCATCAGGTACAATTATAACACTTTCTTTAACGAGGCAACGCAAACTTTCGACGGTGTATCATGTGGGAATGAAACTACAGGAGGGGCCTCATCAGCATTCACCGAAGCAATACAACGACTGCTAACCAATCTCCAAATAGCAACACCTACAATCCCTAGTTTCTTCGCAGCCACGAAGATGAACGTTTCAAATAATGGTGCAACTGTTTATGCCTTCGCTCAATGTGTTGAGACTATCACAACGAAGGGGTGCCTAGATTGCTTGAAGGCTGGGTACAGTAATCTGCAGATTTGTCTTCCCTTTTCAGATGGTCGAGCTTTCGATGCAGGCTGTTTCATGAGATATTCCACTACTTCACTTTTTCATGATAACCAGACAATTGACATCACACCCTTGGTTAAAAAAGGTTCAAGCAACAAATTAGGGAAAACTATTGGTGGAATTGTTGGTGTAGTTCTTGCTTTGATCCTCCTTGCATTGTTTGCCTGGATTAGACAACCAAAAGGAAATAAGACGGTTCCTAGAGGAAGCAACATGAAAAGCGACTTAACTGAAGTAAGCAAGTTGAAAGGCCCAGTCACTTACAGTTATAACGATTTGATGCTGGCAACAAAAAATTTTAGTGAAGAAAATAAACTAGGAGAAGGAGGATTTGGGGTTGTATACAAGGGCACTTTGAAGAATGGGAAAGTTATTGCAGTCAAGAAATTGACTTTACACCACTTCAATAGAGTGGAGGAAGATTTTGAAAGTGAAGTGACCCTTATAAGTAATGTTCATCATCGAAATCTTGTTCGGCTTTTGGGATGTTGTAGTAGAGGCCACAACAGAATCCTTGTCTATGAATACATGAAAAATAGCAGTCTTGACAAATTCTTATTCGGTAACAAGAAAGGTTCTCTCAATTGGAAGCAGCGATATGATATAACTTTAGGAATAGCAAGAGGTTTGACTTATCTACATGAGGAATTTCATGTTCGTATTATACATAGAGATATAAAGACTAACAACATCCTCTTAGATGATGATCTACAACCTAAGATTGCTGATTTTGGACTAGCAAGACTTTTACCTGGAGATAAAACTCATGTAAGCACAAAACTCGCAGGAACATTAGGATATACAGCACCAGAGTATGCAATCCATGGCCAGTTGTCGGAGAAAGCTGATATCTACAGCTATGGTGTTGTAGTTCTAGAAATAATCAGTGGTCAAAAATGCAGAGAATTAAATGTTGATGGTGATGATGAAGGGGCATTCCTTCTTCAAAGAGCTTGGAGGCTATATGAGAAAGAGAGGCATTTAGAGTTGGTGGACAAGACCTTAGACCCTAATGGTTATGATGCCGAAGAAGTAAAGAAAACCATAGAGATTGGTTTGCTTTGCACCCAAGCATCTGCTGATATAAGGCCGATGATGTCTGAAGTAGTTGCTCTGCTTCAAAACAAGGATTTATTAGAGAACATAAGGCCCACTATGCCTATCTTGATTGAAACTAATTAG	1905	0.4205	MLGPHCNLLPLLTFIVWSCCSLDGVASEPQIHLLSARCNPPDFFLVSNSSILTENLNATFRDIRGQIMDQKKHFATAQKGNGENFPVYTLFQCRNYLSTADCAACFDVAAVQIRTCSAATSPSPGAYVVYDGCFIRYNYNTFFNEATQTFDGVSCGNETTGGASSAFTEAIQRLLTNLQIATPTIPSFFAATKMNVSNNGATVYAFAQCVETITTKGCLDCLKAGYSNLQICLPFSDGRAFDAGCFMRYSTTSLFHDNQTIDITPLVKKGSSNKLGKTIGGIVGVVLALILLALFAWIRQPKGNKTVPRGSNMKSDLTEVSKLKGPVTYSYNDLMLATKNFSEENKLGEGGFGVVYKGTLKNGKVIAVKKLTLHHFNRVEEDFESEVTLISNVHHRNLVRLLGCCSRGHNRILVYEYMKNSSLDKFLFGNKKGSLNWKQRYDITLGIARGLTYLHEEFHVRIIHRDIKTNNILLDDDLQPKIADFGLARLLPGDKTHVSTKLAGTLGYTAPEYAIHGQLSEKADIYSYGVVVLEIISGQKCRELNVDGDDEGAFLLQRAWRLYEKERHLELVDKTLDPNGYDAEEVKKTIEIGLLCTQASADIRPMMSEVVALLQNKDLLENIRPTMPILIETN	634

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g2189	634	ProSitePatterns	Protein kinases ATP-binding region signature.	347	370	IPR017441	GO:0005524
	Prci2g2189	634	SMART	serkin_6	341	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci2g2189	634	CDD	STKc_IRAK	347	616	-	-
	Prci2g2189	634	Gene3D	-	32	142	IPR038408	-
	Prci2g2189	634	Gene3D	-	149	253	IPR038408	-
	Prci2g2189	634	Gene3D	Phosphorylase Kinase; domain 1	305	417	-	-
	Prci2g2189	634	FunFam	Cysteine-rich receptor-like protein kinase 2	309	417	-	-
	Prci2g2189	634	ProSiteProfiles	Protein kinase domain profile.	341	620	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci2g2189	634	FunFam	Cysteine-rich receptor-like protein kinase 2	418	622	-	-
	Prci2g2189	634	FunFam	Cysteine-rich receptor-like protein kinase 2	151	254	-	-
	Prci2g2189	634	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Prci2g2189	634	ProSiteProfiles	Gnk2-homologous domain profile.	31	142	IPR002902	-
	Prci2g2189	634	Gene3D	Transferase(Phosphotransferase) domain 1	418	624	-	-
	Prci2g2189	634	Pfam	Protein tyrosine and serine/threonine kinase	344	613	IPR001245	GO:0004672\|GO:0006468
	Prci2g2189	634	ProSiteProfiles	Gnk2-homologous domain profile.	149	254	IPR002902	-
	Prci2g2189	634	Pfam	Salt stress response/antifungal	155	251	IPR002902	-
	Prci2g2189	634	Pfam	Salt stress response/antifungal	52	138	IPR002902	-
	Prci2g2189	634	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	88	631	-	-
	Prci2g2189	634	SUPERFAMILY	Protein kinase-like (PK-like)	316	614	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g2189	Prci-Chr2	16947610	16952915	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g2189	9	632	Receptor kinase-like Gene Family	AT1G70520	36.250	5.75e-121	372

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Prci2g2189		PK_Tyr_Ser-Thr	2.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g2189	-		-	pcin:129300003	775.393