LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g2173	ATGCGTCAACCTATTACTCTCCTTCTTCCCTTATTTATTACCTTCTTCATATTCTGCTCCCTCCGCGGCGTCGTTTCGGACCCCCAGACCTATCTTCTCAGACGTGACTGCTACCAATATGACAGATATGAATATGATGCTAATAAATCCTTCAATAACAGCGTAAGCGCAGCTCTTCGTGACCTCAGAAATCAGGTGGCGAACCTGGGAATGTCCTTGGCCACCTCAGAGCAGTGGGAGCCTTCCGACACAAGCCTCCCCTTTTATGCTCTCTTTTTATGCAGAAACTACCTCTCCGTCGCCGACTGCGTCGCCTGCTTCACCGATGCTGCCGCTGAAATCCTCAACTGCTCCGCCGGGACTAGCTTTGCCCGTATCATCTACGACGGCTGCTTCCTCAGATGGTCGATCCAACAGAGGATTGGGAGAGCAGAGACCTGCTGGAGACGATCCGGTCTCATATCTTGCCAAAGGGACGAGCCAAAGGGTATTGGAAATCCTGCATTGTGTGGGGAACAGACTCTAGAAGAAGCCACAGGATTTACTTCAGCTGCTCAACAACTCTTAATGAATGTTCAAACAACAACACCCAACGGCACTGGTTTCCAGGCAGCTGCAAAGACTCAAGTGCCTAATAATGGACCAACCATCTATGCCTATGCTCAATGTATACAAAGTCTCTCACAGAGTGAGTGCGAGATTTGCTTGATGCAAGGTTACAACACTATGCAGACTTGTCTTCCCGGTTCAAATGGTAGGGCTTATGTAGATGGCTGTTTCATGAGATACTCCACCACTCGCTTCTTTCCTGATGACCAGCCTATTATTATCACTCCTTTAGCCATACGAGGTTCAAGCAAGAAGGGGACAATTATTGGTGCCATTGTTGGAGGGGCAGCTTTTGTGCTTATCCTCCTTGCACTATTGGCTTATATTAGACGATCAAAAAGGCGTGAGAGAGTTTCTAACGCTAATGGAGATATCATTGGAGAGAGCAGCTATTTGATAGGCCGCCCAGTTAATTACAGCTATGGGGATTTGAGGTTTGCAACAAAAAACTTCAGTGTAGAAAATAAACTTGGAGAAGGAGGATTTGGTGTTGTATATAAGGGCACTTTAAAAAATGGAAAAGTTGTTGCTGTCAAGAAATTAACTTTATGCTACTCCAAGAGAGTGGAGGAAGAATTTGAGAGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGTAATCTTGTTCAACTTCTTGGATGTTGCAGTAAAGGCAGTGAGAGAATACTTGTCTATGAATACATGAAAAACACCAGTTTGGATAGATTCTTATTTGGCCAAATGAAAGGTTCTCTTGACTGGAAGCAGCGGTATAATATAATTTTAGGAACAGCAAGAGGTTTGTCATATCTCCATGAAGAATTTCATGTTCGTATTATACACAGAGATATAAAGACTAACAACATCCTCTTAGATGAAGATCTACAACCTAAGGTTTCTGATTTTGGCTTGGCAAGACTTTTACCCAACGAAAAATCTCATCTCAGCACAAAAGTTGTAGGAACATTTGGATATGCAGCCCCAGAATATGTGATTCATGGTCAATTATCAGAGAAAGCTGATATCTATAGCTTTGGTGTTGTAGTTTTAGAAATCATAAGTGGTAAAAGAAATAATGAACTAAAGATTGACAGTGATGCTGAAGGTGAATTCCTCCTACTGAAGGCTTGGAGACTATATGAAAGAGGCACACACTTAGAGTTGATCGATGAGACCTTGGACCCAAATGATTGATGCAGAGAAGTGAAAAAAGTTATAGAAATCGGTTTGTCTTGTACACAAGCATCTGCTGAATTAAGGCCAACAATGTCTGAGGTAGTTCTTTTGCTCCGCAACAAGGGATCATCAGACAACATAAAACCCACAATGCCTATCTTTATTGAAGCTAATTAG	1941	0.4256	MRQPITLLLPLFITFFIFCSLRGVVSDPQTYLLRRDCYQYDRYEYDANKSFNNSVSAALRDLRNQVANLGMSLATSEQWEPSDTSLPFYALFLCRNYLSVADCVACFTDAAAEILNCSAGTSFARIIYDGCFLRWSIQQRIGRAETCWRRSGLISCQRDEPKGIGNPALCGEQTLEEATGFTSAAQQLLMNVQTTTPNGTGFQAAAKTQVPNNGPTIYAYAQCIQSLSQSECEICLMQGYNTMQTCLPGSNGRAYVDGCFMRYSTTRFFPDDQPIIITPLAIRGSSKKGTIIGAIVGGAAFVLILLALLAYIRRSKRRERVSNANGDIIGESSYLIGRPVNYSYGDLRFATKNFSVENKLGEGGFGVVYKGTLKNGKVVAVKKLTLCYSKRVEEEFESEVKLISNVHHRNLVQLLGCCSKGSERILVYEYMKNTSLDRFLFGQMKGSLDWKQRYNIILGTARGLSYLHEEFHVRIIHRDIKTNNILLDEDLQPKVSDFGLARLLPNEKSHLSTKVVGTFGYAAPEYVIHGQLSEKADIYSFGVVVLEIISGKRNNELKIDSDAEGEFLLLKAWRLYERGTHLELIDETLDPNDFXCREVKKVIEIGLSCTQASAELRPTMSEVVLLLRNKGSSDNIKPTMPIFIEAN	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g2173	647	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	475	487	IPR008271	GO:0004672\|GO:0006468
	Prci2g2173	647	ProSiteProfiles	Gnk2-homologous domain profile.	163	268	IPR002902	-
	Prci2g2173	647	Gene3D	Phosphorylase Kinase; domain 1	317	430	-	-
	Prci2g2173	647	FunFam	Cysteine-rich receptor-like protein kinase 2	318	430	-	-
	Prci2g2173	647	CDD	STKc_IRAK	360	624	-	-
	Prci2g2173	647	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	90	645	-	-
	Prci2g2173	647	FunFam	Cysteine-rich receptor-like protein kinase 2	431	635	-	-
	Prci2g2173	647	Pfam	Protein kinase domain	355	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci2g2173	647	SMART	serkin_6	354	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci2g2173	647	SUPERFAMILY	Protein kinase-like (PK-like)	335	627	IPR011009	-
	Prci2g2173	647	Pfam	Salt stress response/antifungal	41	136	IPR002902	-
	Prci2g2173	647	Pfam	Salt stress response/antifungal	174	265	IPR002902	-
	Prci2g2173	647	ProSiteProfiles	Gnk2-homologous domain profile.	33	140	IPR002902	-
	Prci2g2173	647	ProSiteProfiles	Protein kinase domain profile.	354	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci2g2173	647	Gene3D	-	167	268	IPR038408	-
	Prci2g2173	647	Gene3D	-	34	139	IPR038408	-
	Prci2g2173	647	Gene3D	Transferase(Phosphotransferase) domain 1	431	639	-	-
	Prci2g2173	647	ProSitePatterns	Protein kinases ATP-binding region signature.	360	383	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g2173	Prci-Chr2	16697660	16702069	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g2173	1	645	Receptor kinase-like Gene Family	AT1G70520	35.573	6.40e-119	367

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Prci2g2173		Pkinase	3.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g2173	-		-	pcin:129301051	764.992