Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2143 ATGACAATGCGAGAAGACTCGTTCACAATATCAACAACAGTCCCATTTGACAGAGTAGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCACACTTACTGAAGTGTGGACGCAGAGGAAAGCCGAAGCTCTGCCCTTTCAGACTTTCTCAGGATGAGAAAATTTTGATTTGGTACTCTGGACAGCAGGAAAAACACTTGCGGTTGAGTTCAGTCACAAAAGTTGTTCAAGGAGAGGGAAATATAAAGTCCCAAAAGCTAAATCAAAATGGGAAGGAGTGCCATTCATTTTCCCTAATTTATGCTAATGGTGAACGCTCACTTGATCTGATTTGCAAGGACAAAACACAGGCTACTTCTTGGTTTATGGGCTTGAAAGCTATAATTTCTCAGTCCCAATACCCAAGACCTTTTAGTAGTTTAAGAAGCTGCAAAGGTATACAGAGTTGTGTTAGTAGTCCAGCTGGAATCTTACGAAGAAAGAAAAACCTTGGTCTTCTAGAGGATACTGCTGAGTTCACAAAGGTACACAGCGTATGTGCAAGTCCTACTTTGTCACTTTCAGAGAGGTGCTTTTCTGATGGCTTATCATATACCTGTGATAGCTTTTATTCATCAGAGTCCTTCCCGTCTGATGCTCAGAGGGCAGTTGACAATTCAGTTCCAAATTCTCCATATATCAATCCAGATATTCTTAGCAAGAGTAGATCAACATGTGCTGACACAGAATATCAGAAGGATTTGCCCTATAGGTATCTTGTCCCTGCTACCTCTCCACGTGTAGCAAATAGAAATATATTGAAAGATGTCTTGATCTGGGGTGGGGGGATTGTCGGAATTGCTGGGAGTGGGAATGATCAGCTTGTCGAACAACAGGGAGCACATGTGCTATTGCCAAAGTTACTAGAATCTACCATGATGTTAGATGTAGAAAACATAGCATTAGGAGAAAAACATGCTGCACTTGTTACAAAACAAGGTGAAGTGTTAAGCTGGGGTGAGGGGAAAGGAGGAAGGCTGGGGCTCAAAATTGATATAGATATAACCTCACCCAAAATCGTTGATTCTCTTAATGGGGTCCATGTGAAAGATGTTTCCTGCGGGCAGTATCATACGTGTGCTTTAACAGATTCTGGAGAAGTATATGCATGGGGGAATGATGGTTGGGTTGCAGATCAGTTTGGTAAAGGGGAATTCAAAACTCAATGGATACCACAAAAACTCTCTGGTCCTTTAGATGGTATTATTATATCACATGTCACTTGTGGGGAATGGCATACAGCAATTGTCTCATCTTGTGGACGCCTATTTACATATGGGGATGGGACATTTGGAGCTCTTGGGCATGGGAACTCTAAGAGCATTTCCCAACCAAAAGAAGTTGAATCTCTCAAGGGTCTATGGGTGAGGTTTGTTGCTTGTGGATCATGGCACACAGCAGCAATTGTTGAAGTCATGGTTGACCGCTTTAGGTATAACACTGGTAAGCTGTTCACTTGGGGTGATGGAGAGAAAGGGATGCTTGGGCATGCTGACAATGGAAGAAAGCTCTTGCCAACCTGTGTTTCTCAACTTTTGGATTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAATATGGGTAAAGTTTTCACAATGGGAAGTGCAATGCATGGACAGCTAGGAAATCCACGTGCCAAGGATAAATCAGTGACAATTGTTGAAGGACTGCTTAAACAGGAGTTTGTTAAAGAGATATCATCAGGTTCACATCATGTTGCTGTCTTGACATCTTCCAGGAGTGTCTATACATGGGGAAAGGGTGCAAATGGACAGTTAGGGCTAGGTGACACTGAAGATAGATATTCACCATCTTTTGTTGTGGCTCTAGGAGACAGGCAGGTTGAGAGTATCACTTGTGGACCAAGCAGCACAGCTGCTATCTGTTTACACAAACCAATTTCTATTAGTGACCAGTCAGTTTGTAGTGGTTGTAAATTACCTTTTGGATTTACAAGGAAGAAGCATAACTGCTATAATTGTGGTCTCCTTTATTGTCATCCATGTAGTAGCAAAAGGATTACCAACGCAGCTCTAGCACCAAACAAGAGCAAAGCTTTTCGGGTTTGTGACCAATGCTTCAATAAACAGCTTGGAAGTACACCTTCTGTTGTGGCATCAAGTTCCAAAAACTACAGCACTCAGAAGCTTCTGAAGAATCAGAACAAGTTTCCTGATTTTACAGAAGATAGAGGAGAGACAACTGTGACACAGGGTCCACTGTTGTCTCTCAGTCAATCATGCTACAAAAGAAGCGTGCCAGGTGGAAGAAAGGACTGGAAAATCCAACAAGAAAGCCAGCATAATTTAGAAAATATTTCTTGTGTGTTTGGTGGAGTGCCAAAATGGGGGCAAGTTCCATGCCCTGCCCTGTTTAAAAATTGTACAGAAAATTCTGTTTCATCATTTAGAAATAAACTAGGTTCTCTTACTTCGGTGAATTTAGAGTCTACTTTATCCAACAACTTGTATGGAGAGAAAGATACTACAATCTCTGGTAACACATTGATCGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAGAATCCTTGAAGAGCAATGTGAGATTGGAAACCGTAAGTTACAAGAATGTCATAAAAAAATTGAGGAGACTTGGCTCTTGGCGAAGGAGGAGGCTGCAAAGTGCAAGGCAGCGAAAGAGGTCATAAAAGCATTGGTACTAAGGCTTTTGCAGCTGCAAACGGTATCAGATAAAACCGTTCCTGGACAAGAAGGAAAGCTTGGGATACAGGAATATCTCTCGAATTTAACACCCATTCGTACAGATATCAATTCTCCGAAGGATCGTAATGTGGATAGTCTATCGAATTCCCCTATAGTATTCTCTGGCTCGTTAAAATCCAAACTTGCAAGAAGTATGATCCTTAAAAGTGATAGATCAAAGGAGGATTCTCAGTTAACTAAAGCAGAATCTCATGAAGATAGCTCTGAGGGATTGAAAGTTGAATGGGTAGAACAGTATGAGCCTGGTGTCTACATCACTTTAATTACCTTGCCATGCGGGCAGAAGGGCCTGAAGAGAGTGAGATTCAGCCGAAAACAATTTTCTGAGAAGGAAGCCGAGCGATGGTGGGAGAAGAATCAAGCCCCAGTCTACCAGAAGTATGGGATTGAAGGATATATAAAGACAAGTCAAAACTGGGAGAAGGGCTAA 3231 0.4175 MTMREDSFTISTTVPFDRVVEQAIVSIKKGAHLLKCGRRGKPKLCPFRLSQDEKILIWYSGQQEKHLRLSSVTKVVQGEGNIKSQKLNQNGKECHSFSLIYANGERSLDLICKDKTQATSWFMGLKAIISQSQYPRPFSSLRSCKGIQSCVSSPAGILRRKKNLGLLEDTAEFTKVHSVCASPTLSLSERCFSDGLSYTCDSFYSSESFPSDAQRAVDNSVPNSPYINPDILSKSRSTCADTEYQKDLPYRYLVPATSPRVANRNILKDVLIWGGGIVGIAGSGNDQLVEQQGAHVLLPKLLESTMMLDVENIALGEKHAALVTKQGEVLSWGEGKGGRLGLKIDIDITSPKIVDSLNGVHVKDVSCGQYHTCALTDSGEVYAWGNDGWVADQFGKGEFKTQWIPQKLSGPLDGIIISHVTCGEWHTAIVSSCGRLFTYGDGTFGALGHGNSKSISQPKEVESLKGLWVRFVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGEKGMLGHADNGRKLLPTCVSQLLDYDFVQVSCGRMLTVALTNMGKVFTMGSAMHGQLGNPRAKDKSVTIVEGLLKQEFVKEISSGSHHVAVLTSSRSVYTWGKGANGQLGLGDTEDRYSPSFVVALGDRQVESITCGPSSTAAICLHKPISISDQSVCSGCKLPFGFTRKKHNCYNCGLLYCHPCSSKRITNAALAPNKSKAFRVCDQCFNKQLGSTPSVVASSSKNYSTQKLLKNQNKFPDFTEDRGETTVTQGPLLSLSQSCYKRSVPGGRKDWKIQQESQHNLENISCVFGGVPKWGQVPCPALFKNCTENSVSSFRNKLGSLTSVNLESTLSNNLYGEKDTTISGNTLIEEVQRLRAEARILEEQCEIGNRKLQECHKKIEETWLLAKEEAAKCKAAKEVIKALVLRLLQLQTVSDKTVPGQEGKLGIQEYLSNLTPIRTDINSPKDRNVDSLSNSPIVFSGSLKSKLARSMILKSDRSKEDSQLTKAESHEDSSEGLKVEWVEQYEPGVYITLITLPCGQKGLKRVRFSRKQFSEKEAERWWEKNQAPVYQKYGIEGYIKTSQNWEKG 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2143 1076 Pfam FYVE zinc finger 657 715 IPR000306 GO:0046872
Prci2g2143 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 434 482 IPR000408 -
Prci2g2143 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 601 647 IPR000408 -
Prci2g2143 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 547 595 IPR000408 -
Prci2g2143 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 495 543 IPR000408 -
Prci2g2143 1076 Gene3D - 19 135 IPR011993 -
Prci2g2143 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 434 485 IPR000408 -
Prci2g2143 1076 SUPERFAMILY RCC1/BLIP-II 269 651 IPR009091 -
Prci2g2143 1076 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 916 - -
Prci2g2143 1076 Pfam Transcription factor regulating root and shoot growth via Pin3 1007 1061 IPR013591 -
Prci2g2143 1076 CDD PH_PLC_plant-like 18 130 - -
Prci2g2143 1076 Gene3D - 261 389 IPR009091 -
Prci2g2143 1076 Gene3D - 390 486 IPR009091 -
Prci2g2143 1076 Gene3D - 490 661 IPR009091 -
Prci2g2143 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 547 598 IPR000408 -
Prci2g2143 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 327 378 IPR000408 -
Prci2g2143 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 599 650 IPR000408 -
Prci2g2143 1076 SMART fyve_4 649 718 IPR000306 GO:0046872
Prci2g2143 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 326 IPR000408 -
Prci2g2143 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 717 IPR013083 -
Prci2g2143 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 495 546 IPR000408 -
Prci2g2143 1076 SUPERFAMILY FYVE/PHD zinc finger 656 723 IPR011011 -
Prci2g2143 1076 Coils Coil 852 879 - -
Prci2g2143 1076 SUPERFAMILY PH domain-like 19 129 - -
Prci2g2143 1076 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 655 717 IPR017455 -
Prci2g2143 1076 Pfam Pleckstrin homology domain 20 128 IPR001849 -
Prci2g2143 1076 ProSiteProfiles BRX domain profile. 1007 1062 IPR013591 -
Prci2g2143 1076 PRINTS Chromosome condensation regulator RCC1 signature 269 285 IPR000408 -
Prci2g2143 1076 PRINTS Chromosome condensation regulator RCC1 signature 420 436 IPR000408 -
Prci2g2143 1076 PRINTS Chromosome condensation regulator RCC1 signature 594 615 IPR000408 -
Prci2g2143 1076 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Prci2g2143 1076 PRINTS Chromosome condensation regulator RCC1 signature 536 554 IPR000408 -
Prci2g2143 1076 PRINTS Chromosome condensation regulator RCC1 signature 436 450 IPR000408 -
Prci2g2143 1076 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 472 482 IPR000408 -
Prci2g2143 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 379 433 IPR000408 -
Prci2g2143 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 362 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2143 Prci-Chr2 16302630 16310985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2143 960 1066 Major Intrinsic Protein MIP AT1G31880 34.579 7.93e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2143 - - gmx:100797223 1509.2