Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2135 ATGGTGTCTGCAGCTATCGCCATTCATGATCAAAATGGAGTTACCAGATCTCGGGGTAGTATTCCAGTAGGAAATGGAGTATCTTTGAGCTCTGGACTACATTCTGTTGCACGGATTCATCTAAATAATCAGTTTTCTTGTGGGAATGACTGTGCTCCAAAGGTAAGGAAACCGTATACTATCAGGAAACAAAGAGAGAGATGGACAGATGAAGAGCATCTGAAGTTTCTTGAAGCTTTAAAGATGTATGGTCGGGCTTGGCGAAAGATTGAAGAACATGTTGGCACAAAAACTACAGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGATCCTTGTGGGAGCAGCACAAGCTCGATGGAGCCCATTGAAATTCCACCCCCACGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAACTGGTGGAGCTCCCTAACAAAGAAGCTTCCAAACCAAAACAGCTGATTATGTCTAATCCTCTGAAATCATCAGATTTTAACCAGGAAAACCAATCCCCCAAGTCAGTGTTATCGGCAGTTGGTTCAGACACCCTTGGTTCCTCTGATTCAGACACACCAAATGGAAGCTCATCCCCAATTTCATCAATTAGTGCTGTTCATGCTAACAACTTTGTAGTTGCTGAACCTGAAATCCTACAATTAGAGGAGGATGGGTGTCCACCATCAGCTGGACTAAATGATGATTCAACTCTTGATGAGCTACCAAATAAGAAACACGAACTTCTCCAGAAAGAAGGAATCTCTGCCAAAGAAGGTACAACAGAAGAATCATCTGCTCGGGTTCTGAAGCTTTTTGGGACAACTTTGTTAGTAACTGATAACCGCGGGACATCCTCTCAAACAATGGAAACATGCAAGTTGATTCACTCAAACTTCTTGCCAGTGAAATCTTCTGGCCCAGATGTGGAATGTGATATTAATACTTTACCTAATGGAACACATGGTGTTGTTTATAACATGCAGCTTCAGAGTGGAAATTCAGGGCTTGCAGAGTGTCCTTCTGCTTCTTTTGTTCCTTGTTGGAATCTTCCTCACATAAGGTTGCTGCACAAGAAGCAGCCTGAAGGAAAACAACTAGACTCCAATCTTACGGAAATGGAACGGGTAGAAGTTAAGAATGAAGGATCTTTGACTAACTCAAACACTAGCTCTTCTGTAAATGAGGGTAAACAATCAGATATGCAAGCCAAAAGAGATACTTCAGCTATATTTGATTTTGGTGGGAGACAGACGAACTGGGGGAAAGGGTTTGTGCCATATAAGAGGTGCATTGCAGAGAGGGAAAGCCAGGCCTCATCAGTGACATAA 1347 0.4254 MVSAAIAIHDQNGVTRSRGSIPVGNGVSLSSGLHSVARIHLNNQFSCGNDCAPKVRKPYTIRKQRERWTDEEHLKFLEALKMYGRAWRKIEEHVGTKTTVQIRSHAQKFFSKVLRDPCGSSTSSMEPIEIPPPRPKRKPMHPYPRKLVELPNKEASKPKQLIMSNPLKSSDFNQENQSPKSVLSAVGSDTLGSSDSDTPNGSSSPISSISAVHANNFVVAEPEILQLEEDGCPPSAGLNDDSTLDELPNKKHELLQKEGISAKEGTTEESSARVLKLFGTTLLVTDNRGTSSQTMETCKLIHSNFLPVKSSGPDVECDINTLPNGTHGVVYNMQLQSGNSGLAECPSASFVPCWNLPHIRLLHKKQPEGKQLDSNLTEMERVEVKNEGSLTNSNTSSSVNEGKQSDMQAKRDTSAIFDFGGRQTNWGKGFVPYKRCIAERESQASSVT 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2135 448 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Prci2g2135 448 SMART sant 64 112 IPR001005 -
Prci2g2135 448 MobiDBLite consensus disorder prediction 131 153 - -
Prci2g2135 448 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Prci2g2135 448 MobiDBLite consensus disorder prediction 386 404 - -
Prci2g2135 448 PANTHER SWI/SNF COMPLEX-RELATED 48 387 - -
Prci2g2135 448 MobiDBLite consensus disorder prediction 158 207 - -
Prci2g2135 448 Gene3D - 67 113 - -
Prci2g2135 448 CDD SANT 67 110 IPR001005 -
Prci2g2135 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Prci2g2135 448 MobiDBLite consensus disorder prediction 116 207 - -
Prci2g2135 448 SUPERFAMILY Homeodomain-like 59 112 IPR009057 -
Prci2g2135 448 MobiDBLite consensus disorder prediction 383 410 - -
Prci2g2135 448 NCBIfam myb-like DNA-binding domain, SHAQKYF class 63 112 IPR006447 GO:0003677
Prci2g2135 448 ProSiteProfiles SANT domain profile. 63 114 IPR017884 -
Prci2g2135 448 FunFam protein REVEILLE 6 isoform X1 67 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2135 Prci-Chr2 16251478 16255237 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci2g2135 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2135 - - pcin:129303890 851.662