LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g2134	ATGGTGTCTGCAGCTATCGCCATTCATGATCAAAATGGAGTTACCAGATCTCGGGGTAGTATTCCAGTAGGAAATGGAGTATCTTTGAGCTCTGGACTACATTCTGTTGCACGGATTCATCTAAATAATCAGTTTTCTTGTGGGAATGACTGTGCTCCAAAGGTAAGGAAACCGTATACTATCAGGAAACAAAGAGAGAGATGGACAGATGAAGAGCATCTGAAGTTTCTTGAAGCTTTAAAGATGTATGGTCGGGCTTGGCGAAAGATTGAAGAACATGTTGGCACAAAAACTACAGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGATCCTTGTGGGAGCAGCACAAGCTCGATGGAGCCCATTGAAATTCCACCCCCACGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAACTGGTGGAGCTCCCTAACAAAGAAGCTTCCAAACCAAAACAGCTGATTATGTCTAATCCTCTGAAATCATCAGATTTTAACCAGGAAAACCAATCCCCCAAGTCAGTGTTATCGGCAGTTGGTTCAGACACCCTTGGTTCCTCTGATTCAGACACACCAAATGGAAGCTCATCCCCAATTTCATCAATTAGTGCTGTTCATGCTAACAACTTTGTAGTTGCTGAACCTGAAATCCTACAATTAGAGGAGGATGGGTGTCCACCATCAGCTGGACTAAATGATGATTCAACTCTTGATGAGCTACCAAATAAGAAAGAAGGAATCTCTGCCAAAGAAGGTACAACAGAAGAATCATCTGCTCGGGTTCTGAAGCTTTTTGGGACAACTTTGTTAGTAACTGATAACCGCGGGACATCCTCTCAAACAATGGAAACATGCAAGTTGATTCACTCAAACTTCTTGCCAGTGAAATCTTCTGGCCCAGATGTGGAATGTGATATTAATACTTTACCTAATGGAACACATGGTGTTGTTTATAACATGCAGCTTCAGAGTGGAAATTCAGGGCTTGCAGAGTGTCCTTCTGCTTCTTTTGTTCCTTGTTGGAATCTTCCTCACATAAGGTTGCTGCACAAGAAGCAGCCTGAAGGAAAACAACTAGACTCCAATCTTACGGAAATGGAACGGGTAGAAGTTAAGAATGAAGGATCTTTGACTAACTCAAACACTAGCTCTTCTGTAAATGAGGGTAAACAATCAGATATGCAAGCCAAAAGAGATACTTCAGCTATATTTGATTTTGGTGGGAGACAGACGAACTGGGGGAAAGGGTTTGTGCCATATAAGAGGTGCATTGCAGAGAGGGAAAGCCAGGCCTCATCAGTGACATAA	1329	0.4251	MVSAAIAIHDQNGVTRSRGSIPVGNGVSLSSGLHSVARIHLNNQFSCGNDCAPKVRKPYTIRKQRERWTDEEHLKFLEALKMYGRAWRKIEEHVGTKTTVQIRSHAQKFFSKVLRDPCGSSTSSMEPIEIPPPRPKRKPMHPYPRKLVELPNKEASKPKQLIMSNPLKSSDFNQENQSPKSVLSAVGSDTLGSSDSDTPNGSSSPISSISAVHANNFVVAEPEILQLEEDGCPPSAGLNDDSTLDELPNKKEGISAKEGTTEESSARVLKLFGTTLLVTDNRGTSSQTMETCKLIHSNFLPVKSSGPDVECDINTLPNGTHGVVYNMQLQSGNSGLAECPSASFVPCWNLPHIRLLHKKQPEGKQLDSNLTEMERVEVKNEGSLTNSNTSSSVNEGKQSDMQAKRDTSAIFDFGGRQTNWGKGFVPYKRCIAERESQASSVT	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g2134	442	FunFam	protein REVEILLE 6 isoform X1	67	115	-	-
	Prci2g2134	442	SMART	sant	64	112	IPR001005	-
	Prci2g2134	442	MobiDBLite	consensus disorder prediction	131	153	-	-
	Prci2g2134	442	Pfam	Myb-like DNA-binding domain	65	108	IPR001005	-
	Prci2g2134	442	ProSiteProfiles	Myb-like domain profile.	60	110	IPR001005	-
	Prci2g2134	442	MobiDBLite	consensus disorder prediction	229	262	-	-
	Prci2g2134	442	MobiDBLite	consensus disorder prediction	158	207	-	-
	Prci2g2134	442	MobiDBLite	consensus disorder prediction	377	404	-	-
	Prci2g2134	442	Gene3D	-	67	113	-	-
	Prci2g2134	442	CDD	SANT	67	110	IPR001005	-
	Prci2g2134	442	MobiDBLite	consensus disorder prediction	244	258	-	-
	Prci2g2134	442	MobiDBLite	consensus disorder prediction	380	398	-	-
	Prci2g2134	442	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	60	114	IPR017930	-
	Prci2g2134	442	MobiDBLite	consensus disorder prediction	116	207	-	-
	Prci2g2134	442	SUPERFAMILY	Homeodomain-like	59	112	IPR009057	-
	Prci2g2134	442	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	63	112	IPR006447	GO:0003677
	Prci2g2134	442	ProSiteProfiles	SANT domain profile.	63	114	IPR017884	-
	Prci2g2134	442	PANTHER	SWI/SNF COMPLEX-RELATED	48	381	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g2134	Prci-Chr2	16251476	16255237	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Prci2g2134		Myb_DNA-binding	2.2e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g2134	-		-	pcin:129303890	833.172