Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2080 ATGAGGAAAAAAACGTGCATAAAGTTCGAGCCTTTACTATTATTCCTTTCTGGGTTATTCTCAGTCTTCGTCTTCGTTGAGTCTCAAGCAAACCCTAGCCCAGATGGTCCTGCAATGGAAGCTCTCAAGAAGAGCCTCAACGCCCCTGACTCTATCGGATGGTCTAATCCGAATCCCTGCAAGTGGGATCATGTTGGTTGCGATGCAAATCGGGTCACGCGGATCCAAATTGGACGTCTAGGTCTTCAAGGTACTCTTCCCCCGAGTCTTGGAAATCTCACCGAGTTACAGCGCTTGGAGCTTCAATATAACAAGATTTCGGGTCCTCTTCCTAGCTTAAAGGGGTTGGGTTCTTTGCAAGTGCTTCTTCTCAGTAACAACCAATTTAGCTCGATCCCTAGCGATTTTTTCACTGACATGTCTCAGCTTCAGTCCGTGGAGATCGACAACAACCCATTTGAGGAATGGGAGATACCTCTAAGTCTTCGAGACGCTTCGTCCCTTCAGAACTTCTCGGCCAACTCGGCTAATATCACAGGCAAAATACCAGATTTTCTTAATGCAACTGTGTTTCCTGGTTTGACCCTTTTGCATTTGTCCTTTAATGACCTCGAGGGTGGGTTTCCCGCTAGCTTTTCTGGTTTGCCGATTGAGACTTTGTGGGTTAATGGGCAGACAGGTAAACTTAATGGAACCATAGATTTTATGCAGGATATGACTTCCTTGAGGGAGGTTTGGTTGCATTCAAATGCGTTTTCGGGTCCATTACCAGATTTTTCAGGCTTGAAGAATTTGGAGACCCTGAGTTTAAGGGATAATTCGTTTACCGGTCCTGTTCCTTTGTCATTGATGAGTCTTAAGTCCCTAAAAGTTGTAAATTTGACTAATAACTTACTTCAAGGGCCTGTGCCAGCGTTCAATACAGGGGTTGAAGTGGATATGAGTGAGGATTCGAATGACTTTTGCTTGCCAAGTCCTGGGGATTGTGATCCTCGGGTGAATACTTTGCTTTCCATTGTTAAACTTATGGGATATCCTCAAAGGTTTGCTGAGGAATGGAAGGGCAATGATCCATGTGCTGATTGGCTTGGGATCACCTGTAGTAATGGGAACATTACTGTTGTTAATTTTCAGAAGATGGGTCTATCTGGTACCATATCCCCAGAGTTTGCCTCAATCAAGTCATTGCAAAGAATTATCCTTGCCGATAACAATCTCACTGGTACGATTCCAGGAGAGCTCACTACACTTACGGTGCTTGCTGAACTAAATCTTGCAAATAATCAGCTTTATGGAAAAGTCCCTGCTTTTAGGAGTAACGTAATTGTTAACACGAATGGTAACAAGGACATTGGCAAGGATAGAAGCAGTTCAACTCCTCCAGGTACAGCATCTCCAAACCCAGCAGGTCAAGGTACAACAGGAGAAAATGGTGGGATTTCTGCAAATGGTGGCAAAAAATCTTCTCATGTTGTAGTGATCGTAATTGCTGTAGTTGGAGGTGTATTTTTGGTTTCGATGATTGGTGCCATAGTTTTCTGCTTGTATAGAATGAAGCAAAAGCAGTTAAGCAGGGTACAGAGCCCAAATGCTCTGGTAATCCACCCTCGTCATTCTGGATCAGATAATGAAAGTTTGAAAATAACAGTCGCTGGCTCAAGTGTCAGTGTCGGCACAGCTAGTGAAACTCAAACGGTACCTGGCAGTGAGACAGGAGGAGACATCCAAATGGTTGAAGCTGGAAACATGGTCATTTCCATACAAGTCCTTCGGAATGTGACTGACAATTTCAGTGAAGAGAATATATTGGGACAAGGGGGTTTTGGAACAGTTTACAAAGGTGAACTTCATGATGGTACCAAAATTGCAGTGAAAAGAATGGAGTCTGGAGCAATAACTGGAAAGGGTGCATCAGAATTTAAATCTGAAATCGCTGTTTTGACAAAAGTTCGCCATCGGCATCTTGTTGCACTTCTCGGCTACTGCTTGGATGGAAATGAAAAGCTTTTGGTATATGAATACATGCCTCAGGGTACACTAAGTAGGCATCTATTCAACTGGCCAGAAGAAGGACTACAACCCTTAGACTGGAACAGGAGGTTGACCATTGCTTTAGATGTGGCTAGGGGTGTTGAGTACCTTCATGGCTTAGCCCATCAAAGCTTTATACATAGAGATCTAAAGCCCTCAAACATTCTTCTGGGAGATGATATGAGAGCAAAGGTTGCAGATTTTGGTCTTGTCCGTCTTGCTCCTGAAGGAAAAGCCTCTATAGAAACACGAATTGCTGGAACATTCGGATACTTGGCACCAGAATATGCAGTTACCGGCCGTGTGACAACTAAAGTAGATGTATACAGTTTCGGGGTGATATTGATGGAAATCATAACTGGACGGAAAGCACTTGATGAAACCCAACCTGAGGACAGCATGCACCTTGTAACATGGTTCCGCAGAATGTACATAAATGAAGAATCATTCAGCAAGGCTATCGATCCTACGATAGATCGCAATGAGGAAACTCTTTCTAGCATTCGCATAGTGGCAGAACTAGCAGGCCACTGCTGCGCGCGAGAGCCATATCAAAGGCCAGACATGGGTCATGCCGTGAATGTGCTTTCCTCTCTGGCAGAACTCTGGAAGCCATCTGATCAGAGCGCCGAAGATATCTACGGAATCGATCTTGACATGTCTTTGCCTCAAGCACTCAAGAAATGGCAGGCTTATGAAGGTGGAGGAGTAGGCCCTGTGGACTCATCTTCCTCCTCACTCCCTCCAAGCTTGGACAGCACGCAGACGAGCATACCAACACGCCCGTATGGTTTTGCCGAGTCTTTCACGTCAAACGATGGGAGGTGA 2859 0.4477 MRKKTCIKFEPLLLFLSGLFSVFVFVESQANPSPDGPAMEALKKSLNAPDSIGWSNPNPCKWDHVGCDANRVTRIQIGRLGLQGTLPPSLGNLTELQRLELQYNKISGPLPSLKGLGSLQVLLLSNNQFSSIPSDFFTDMSQLQSVEIDNNPFEEWEIPLSLRDASSLQNFSANSANITGKIPDFLNATVFPGLTLLHLSFNDLEGGFPASFSGLPIETLWVNGQTGKLNGTIDFMQDMTSLREVWLHSNAFSGPLPDFSGLKNLETLSLRDNSFTGPVPLSLMSLKSLKVVNLTNNLLQGPVPAFNTGVEVDMSEDSNDFCLPSPGDCDPRVNTLLSIVKLMGYPQRFAEEWKGNDPCADWLGITCSNGNITVVNFQKMGLSGTISPEFASIKSLQRIILADNNLTGTIPGELTTLTVLAELNLANNQLYGKVPAFRSNVIVNTNGNKDIGKDRSSSTPPGTASPNPAGQGTTGENGGISANGGKKSSHVVVIVIAVVGGVFLVSMIGAIVFCLYRMKQKQLSRVQSPNALVIHPRHSGSDNESLKITVAGSSVSVGTASETQTVPGSETGGDIQMVEAGNMVISIQVLRNVTDNFSEENILGQGGFGTVYKGELHDGTKIAVKRMESGAITGKGASEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLQPLDWNRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEIITGRKALDETQPEDSMHLVTWFRRMYINEESFSKAIDPTIDRNEETLSSIRIVAELAGHCCAREPYQRPDMGHAVNVLSSLAELWKPSDQSAEDIYGIDLDMSLPQALKKWQAYEGGGVGPVDSSSSSLPPSLDSTQTSIPTRPYGFAESFTSNDGR 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2080 952 SMART LRR_typ_2 116 139 IPR003591 -
Prci2g2080 952 SMART LRR_typ_2 239 261 IPR003591 -
Prci2g2080 952 SMART LRR_typ_2 417 439 IPR003591 -
Prci2g2080 952 SMART LRR_typ_2 191 214 IPR003591 -
Prci2g2080 952 SMART LRR_typ_2 93 115 IPR003591 -
Prci2g2080 952 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Prci2g2080 952 FunFam receptor protein kinase TMK1 675 892 - -
Prci2g2080 952 SUPERFAMILY L domain-like 43 305 - -
Prci2g2080 952 PANTHER OSJNBA0070M12.3 PROTEIN 19 952 - -
Prci2g2080 952 SMART serkin_6 597 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g2080 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672|GO:0006468
Prci2g2080 952 Gene3D Phosphorylase Kinase; domain 1 558 674 - -
Prci2g2080 952 MobiDBLite consensus disorder prediction 913 952 - -
Prci2g2080 952 Pfam Leucine rich repeat N-terminal domain 334 368 IPR013210 -
Prci2g2080 952 Pfam Leucine rich repeat N-terminal domain 34 68 IPR013210 -
Prci2g2080 952 MobiDBLite consensus disorder prediction 916 952 - -
Prci2g2080 952 Gene3D Transferase(Phosphotransferase) domain 1 675 894 - -
Prci2g2080 952 FunFam Receptor-like kinase TMK4 33 327 - -
Prci2g2080 952 ProSiteProfiles Leucine-rich repeat profile. 118 139 IPR001611 GO:0005515
Prci2g2080 952 SUPERFAMILY L domain-like 335 439 - -
Prci2g2080 952 FunFam receptor protein kinase TMK1 558 674 - -
Prci2g2080 952 FunFam Leucine-rich repeat receptor-like kinase 331 454 - -
Prci2g2080 952 CDD STKc_IRAK 603 876 - -
Prci2g2080 952 MobiDBLite consensus disorder prediction 448 482 - -
Prci2g2080 952 SUPERFAMILY Protein kinase-like (PK-like) 576 881 IPR011009 -
Prci2g2080 952 Pfam Protein tyrosine and serine/threonine kinase 600 866 IPR001245 GO:0004672|GO:0006468
Prci2g2080 952 ProSiteProfiles Protein kinase domain profile. 597 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g2080 952 Gene3D Ribonuclease Inhibitor 331 455 IPR032675 -
Prci2g2080 952 Gene3D Ribonuclease Inhibitor 34 329 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2080 Prci-Chr2 15910709 15915041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2080 84 879 Receptor kinase-like Gene Family AT5G07280 31.296 2.74e-86 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Prci2g2080 PK_Tyr_Ser-Thr 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2080 K00924 - qsa:O6P43_014259 1422.91