Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2078 ATGACCAGGAGGAAGGTGCAGCTCGCATTCATTGTCAATGACTCTGCGAGGAAGACAACATACAAGAAGAGGAAGAATGGTATGGTGAAGAAGGCAAGTGAACTGACCACCCTTTGTGGGGTTGAAGCATGTATGATAATTTACAGTCCTTATGAATCTGAGCCTGAGGTTTGGCCTTCCTCCATGGAAGCCCAGAGCACCCTCGTGCGGTTCAGACAGCTTCCGGAGATGGAGCAGTGTAAGAAGATGATGAACCAGATGAGCTTCACCAGGGAAAGGATCCAGAAAGTGAGTGAGCAGGTGAAGAAGATGAGGAAGAACAATAGGGAGAAAGAGCTTGCCCAGATCCTGTATCACTTCATGAGCACTGGGATTTTTCTGCAGAATATGACTGTCAATGATCTCTATGATCTGTCATGGGTGATTGAACTGAACCTGAAGGATATCTGCAGGAGGATGGAGGCACTGGAGATTGAACCTCAGAATGATGAAATCCAAATTCAAATTCAGGGACAAGCACAAGCAGGAGAAGAAGATCGTAACAATGGCAAGGGGATAATGGAGATGAGCATAAGCACATTGCAGAGACAGCAGAATTTTATGGAACTGATGAGCTGTGCTGGGGATGAGACTCTGCCATTTGGAGAAGCCAATCTCTACAATGCTTGGCCTAGCCCCTTTTACTTTTGA 690 0.4623 MTRRKVQLAFIVNDSARKTTYKKRKNGMVKKASELTTLCGVEACMIIYSPYESEPEVWPSSMEAQSTLVRFRQLPEMEQCKKMMNQMSFTRERIQKVSEQVKKMRKNNREKELAQILYHFMSTGIFLQNMTVNDLYDLSWVIELNLKDICRRMEALEIEPQNDEIQIQIQGQAQAGEEDRNNGKGIMEMSISTLQRQQNFMELMSCAGDETLPFGEANLYNAWPSPFYF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2078 229 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Prci2g2078 229 Coils Coil 80 114 - -
Prci2g2078 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Prci2g2078 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci2g2078 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci2g2078 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci2g2078 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci2g2078 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Prci2g2078 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Prci2g2078 229 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Prci2g2078 229 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Prci2g2078 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2078 Prci-Chr2 15890968 15892011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2078 1 156 Type I MADS-box Gene Family AT5G48670 48.718 3.65e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci2g2078 SRF-TF 6.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2078 - - pcin:129298000 453.366