Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2038 ATGGCTACTTCCTTGGATATGTCACTTGATGATAGGATAAAAACCAGAAGTAACAGGGAGAGGGGTAGAGGGCGTGGCAGAGCCCCCCGTGGCCGTGGAGCAGGTCAGAATCTTGGGGTTGGAAGAATGCCTGGTGCAGCTCGTAGAGCTCCTCTTGGAATTAATTCTCGGCCATCTGCTTATGCCATTGCCAAGTCTATGCGCAGAACCAGGCGTTTTCCATGGCAGCATGATTTATTTGAAGATAGCCTAAAAGCTGCAGGGATCCAAGGAGTAGAAGTAGGCACAAAGTTGTATGTTTCCAACTTGGATCATGGAGTAACCAATGAGGATATAAGGGAACTTTTTGCGGAGATTGGAGACCTGAAGCGCTATGCAGTTCACTACGACAGAAATGGACGTCCTAGTGGTTCTGCTGAAGTTGTCTATACTAGAAGGAGTGATGCATTTGCAGCTCTTAAACGATACAATAATGTTCTTTTGGATGGAAAGCCCATGAAGATTGAAGTTGTTGGTGCCAATGCAGAATTGCCTATATCAGCTCGGGTGAATGTGTCTGGGATAAATGGGCAGAGGAAGAGGACAGTTGTCATGACGCCTGGAGGTCGAGGTCGACCTGGAGGTAGAACTGGAGGTCCTGCTATGTTTAATCGTGGTCCAGGATGGGGACGTCGTGGTGGTGGAAGGACTGGTGGCATGGGCATGCGTGGCCGAGGTGGTGGACGTGGTAGGGGTCGGGGCTGGGGTCGCGGGAAGAAGGATGCAGTTGAGAAATCTGCAGCGGAACTTGACAAAGAACTGGAGACTTATCATGCTGAGGCCATGCATATCTCATGA 837 0.4982 MATSLDMSLDDRIKTRSNRERGRGRGRAPRGRGAGQNLGVGRMPGAARRAPLGINSRPSAYAIAKSMRRTRRFPWQHDLFEDSLKAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFAEIGDLKRYAVHYDRNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEVVGANAELPISARVNVSGINGQRKRTVVMTPGGRGRPGGRTGGPAMFNRGPGWGRRGGGRTGGMGMRGRGGGRGRGRGWGRGKKDAVEKSAAELDKELETYHAEAMHIS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2038 278 Gene3D - 91 172 IPR012677 -
Prci2g2038 278 CDD RRM_THOC4 96 169 - -
Prci2g2038 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Prci2g2038 278 SMART FoP_duplication_2 201 278 IPR025715 -
Prci2g2038 278 MobiDBLite consensus disorder prediction 1 51 - -
Prci2g2038 278 SUPERFAMILY RNA-binding domain, RBD 21 170 IPR035979 GO:0003676
Prci2g2038 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Prci2g2038 278 Pfam C-terminal duplication domain of Friend of PRMT1 223 272 IPR025715 -
Prci2g2038 278 MobiDBLite consensus disorder prediction 9 24 - -
Prci2g2038 278 Coils Coil 253 273 - -
Prci2g2038 278 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 276 - -
Prci2g2038 278 SMART rrm1_1 97 169 IPR000504 GO:0003723
Prci2g2038 278 MobiDBLite consensus disorder prediction 199 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2038 Prci-Chr2 15519827 15525194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2038 95 170 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 8.56e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2038 K12881 - qsa:O6P43_020583 355.91