Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2016 ATGGCGGACGTAATGGTAATGAATGAGATTGAGGCAACAGCATTACGGCTTGGAGTCGATCTCTCCACTCTTGACTTGGATTCCGTTCGCCTTCCACCGGGCGATGATTTTGGCGTCGTCAGTGATGATGAAGATATCTACCAGGAGGAAAATCTGGAGTTGGATTCTGGATTTAGCAACATTATAGTTGTGGATAACCTTCCAGTTGTGCCCCGGGAGAAGTTTGAGAAGCTGGAAGGTGTAATACGTAAAATTTTTAGTCAGATTGGTGTGATTAAAGAGGATGGCCTGTTTATGCCTGTTGATCCTGGTTCTGAAATAAGTTTAGGTTATTGCTTCATTGAGTATAATACTCCTCAGGAAGCTGAGCTTGCAAAAGAAAAGACACATGGATACAAGTTGGATCGTGCACATGTTTTTTCGGTGAACATGTTTGATGACTTTAACCGGTATATGAAAGTACCAGATCAGTGGGCTCCCCCCGAAACAAACCCATATGCTGCAGGAGAAAATCTTCAGCATTGGCTTACTGATGCAAAAGCCCGAGACCAGTTTGTGATTCGTGCTGGCTCTGATACTGAGGTTTTATGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTACAAGCGTACATTTTGGACTGAGAGTTTTGTGCAATGGTCCCCACTTGGTACATATTTGGCAACAGTTCACAGGCAGGGGGCAGCTGTTTGGGGAGGTGCCACAAACTTCAATCGTCTTATGCGATATGCTCATCCACAGGTAAAACTCATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTACAGTAGCCATGAACCAAGCAATCCTCGTGATGCAAATAGGGTTGTGATAAATATCTTTGATGTGAGACTTGGTAAAGTGATGAGGGATTTCAAAGGAAGTGCAGACGATTTTGCAGTTGGAGGTACTGGGGGTGTTGCTGGGGTGTCATGGCCTGTTTTCAGATGGGGTGGTGGTAGAGATGACAAGTACTTTGCCAGAATGGGGAAAAATGTGATCTCTGTATATGAGACAGAGACCTTTTCTCTTATTGACAAGAAGTCCTTAAAGGTTGAAAATGTAATGGATTTCATCTGGTCTCCAACAGATCCTATTCTTGCACTTTTTGTTCCTGAGATGGGTGGTGGGAACCAGCCTGCTAGGGTTAGTCTTGTTCAAATCCCCGGTAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGATTGCAAGATGTACTGGCAAAGCAATGGGGACTATCTTGCTGTTAAGGTAGATCGGTACACAAAGACCAAAAAAAGCACTTACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGATATACCCATTGAAGTTCTGGAGCTTGAGAATAAAAATGACAAGATTATTGCTTTTGCTTGGGAGCCCAAAGGTCATAGGTTTGCAGTTATTCATGGTGATAACCCTAAGCCTGATATTAGCTTTTACACCATGCGGACTGCTCAGAACACTGGCCGGGTTTCAAAACTTGTTACTTTGAAAGGCAAGCAGGCAAATGCTCTTTTTTGGTCACCTGCAGGCCGCTACATTGTGCTTGCAGGTTTGAAAGGATTCAATGGACAATTGGAATTTTATAATGTTGATGAGCTTGAAACTATGGCAACTGCTGAGCATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGGTATGTTGCAACTTCTGTGACTTCGGTCCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAACTTCTCTATCGCATCTTGAAGGATCACTTCTATCAGTTCTTATGGCGACCAAGGCCACCATCTTTCTTGAGTCCAGAGAAAGAGGAAGAGATTGGAAAGAACTTGAAGAAGTATAGCAAGAAGTACGAGGCTGAAGACCAAGACGTGTCACTGCTACTGAGCGAGCAGGAACGCGAGAAGCGCAGGCTTTTGAAAGAAGAGTGGGACAAGTGGGTGAATCAATGGAGGCAGCTTCATGAAGAGGACAAGTCAGGGAGGCAAAAACTTAGGGATGGTGAAGCCAGTGATGAAGAAGAGGAATACGAGGCTAAGGACATTGAAGTTGAGGAAGTGGTGGATGTGTCAGAGGAGGTCCTTCCTTTTGAGTATGAACACGAGTGA 2160 0.437 MADVMVMNEIEATALRLGVDLSTLDLDSVRLPPGDDFGVVSDDEDIYQEENLELDSGFSNIIVVDNLPVVPREKFEKLEGVIRKIFSQIGVIKEDGLFMPVDPGSEISLGYCFIEYNTPQEAELAKEKTHGYKLDRAHVFSVNMFDDFNRYMKVPDQWAPPETNPYAAGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGATNFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRLGKVMRDFKGSADDFAVGGTGGVAGVSWPVFRWGGGRDDKYFARMGKNVISVYETETFSLIDKKSLKVENVMDFIWSPTDPILALFVPEMGGGNQPARVSLVQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISFYTMRTAQNTGRVSKLVTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFYQFLWRPRPPSFLSPEKEEEIGKNLKKYSKKYEAEDQDVSLLLSEQEREKRRLLKEEWDKWVNQWRQLHEEDKSGRQKLRDGEASDEEEEYEAKDIEVEEVVDVSEEVLPFEYEHE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2016 719 MobiDBLite consensus disorder prediction 674 696 - -
Prci2g2016 719 PIRSF Transl_init_eIF3b 6 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Prci2g2016 719 CDD RRM_eIF3B 59 143 IPR034363 -
Prci2g2016 719 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Prci2g2016 719 SUPERFAMILY RNA-binding domain, RBD 57 147 IPR035979 GO:0003676
Prci2g2016 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 135 IPR000504 GO:0003723
Prci2g2016 719 Gene3D - 55 154 IPR012677 -
Prci2g2016 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
Prci2g2016 719 SUPERFAMILY DPP6 N-terminal domain-like 218 598 - -
Prci2g2016 719 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Prci2g2016 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Prci2g2016 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 49 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Prci2g2016 719 Gene3D - 178 382 IPR015943 GO:0005515
Prci2g2016 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 40 710 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Prci2g2016 719 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Prci2g2016 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Prci2g2016 719 Gene3D - 410 623 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2016 Prci-Chr2 15303296 15309045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2016 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.164 0.0 1174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2016 K03253 - gmx:100817394 1292.33