Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2004 ATGGAGAAGAACCCGACAGGTCTGAGGAAAGGTACCTGGACCCAAGAGGAAGACGATCTTCTCAAAGCTAGCATTCACCAGTACGGCGAGGGAAAATGGCATCTTGTTCCTCAAAGAACTGGTTTGAAGAGATGCAGGAAGAGCTGCAGAATGAGATGGTTGAATTATCTGAAACCCAACATCAACCGAGGAAGCTTCACCGACGACGAGGTTGACATGATTCAAAGGTTCCATAAACTTCTGGGCAACAGATGGTCGTTGATAGCTGGAAGGCTGCCAGGAAGAACAGCGAATGACGTGAAGAATTTCTGGCACACCAACATGCGGAAGAGGAAGAATAAAGAAGAAAGCCATGGGACGAAAGCAAAAGAGGATCAGACAGAAGAAGTAAAACAGCACGTAGTGATAAAACCTCAGCCTCACACTTTCTCTAAGAATTCGCCATGGCTGAGGAGGAATAATAATAATATTAAGATTGTTTCCGCAAGTGAAGGTGGTGACACTGATATTATTAATGCTGAAACTGGAACTAGTTCTAGTGGTGATATGAAAGAGAGTGTTGCAGAGCCATGTGCTGTTCATTTTACTCAGAGAGATAAATTAGAAGCGTGGTGGGCGAGTTTGCTGAATGATGAAGGAGATGATGAAGGGCAAGCTGGGAATTTCACTATGGAGTTTTGGGACCAAGAAGATTTTCTGAAAATTGAAGGTCCATTCGGGGAAGGCCTGGGTAGTTGTTGGAGTCAGTCATTGCTCATATAA 762 0.4423 MEKNPTGLRKGTWTQEEDDLLKASIHQYGEGKWHLVPQRTGLKRCRKSCRMRWLNYLKPNINRGSFTDDEVDMIQRFHKLLGNRWSLIAGRLPGRTANDVKNFWHTNMRKRKNKEESHGTKAKEDQTEEVKQHVVIKPQPHTFSKNSPWLRRNNNNIKIVSASEGGDTDIINAETGTSSSGDMKESVAEPCAVHFTQRDKLEAWWASLLNDEGDDEGQAGNFTMEFWDQEDFLKIEGPFGEGLGSCWSQSLLI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2004 253 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Prci2g2004 253 CDD SANT 65 108 IPR001005 -
Prci2g2004 253 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Prci2g2004 253 FunFam Myb transcription factor 10 62 - -
Prci2g2004 253 CDD SANT 12 57 IPR001005 -
Prci2g2004 253 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Prci2g2004 253 MobiDBLite consensus disorder prediction 110 131 - -
Prci2g2004 253 Gene3D - 64 137 - -
Prci2g2004 253 SMART sant 9 59 IPR001005 -
Prci2g2004 253 SMART sant 62 110 IPR001005 -
Prci2g2004 253 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Prci2g2004 253 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Prci2g2004 253 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 181 - -
Prci2g2004 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 61 IPR017930 -
Prci2g2004 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Prci2g2004 253 Gene3D - 2 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2004 Prci-Chr2 15212751 15214992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2004 1 209 MYB Transcription Factor Family AT1G66370 48.858 1.40e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g2004 Myb_DNA-binding 3.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2004 - K16166 pcin:129304058 537.339