Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2003 ATGGAGAAGATCAAATCAGAGTTGAGGAAAGGTGCATGGACCCAAGAGGAAGACAATCTTCTCAGAACATGCGTTCGAAAGTATGGCGAGGGAAACTGGAATCTGATTCCTCAAAGAGCTGGTTTGAAGAGATGCAGGAAGAGCTGCAGAATGAGATGGTTGAATTATCTGAAACCCAACATCAACCGAGGAAGCTTCACTGAAGACGAGGCTGATATGATTCGAAGGTTCCATAAACTTCTGGGCAACAGATGGTCGATGATAGCTGGAAGGCTACCTGGAAGAACAGCGAACGACGTGAAGAACTTCTGGCACACCAAAATGCGCAAAGCAGCAGAAGAAAATCAGAGGAAGAAGAAAGCAGCGGAAGAGGTGAGCATCATCACGGAGGACACAGCGAAAGTAAAAGTACAGCAAGTAGTACAAGTCATAAAACCTCGGCCACATACTTTCTCTGAGAATTCGCCATGGTTGAGGAACAAGAGTTATGAGCTTGGTTCTGCAAGTGAAAGTGCTAGCAGCAGTAGTTTTGCAGCACAGCCAGGTCCTCCTGCTGCTGATTCTGGCAAGAGCGAGGCAGAAGAAGAGTGGTGGGAGAATTTACTGAAGAGTGCAGGAGGTGATGATGAGGGGCAAGAAGGTAATTTCATGGTGGACTTTTTTGACCAAGATTTCCTCAGAATGGAGGGTCTCCACCATTGGTGGAGTCACTAG 714 0.4692 MEKIKSELRKGAWTQEEDNLLRTCVRKYGEGNWNLIPQRAGLKRCRKSCRMRWLNYLKPNINRGSFTEDEADMIRRFHKLLGNRWSMIAGRLPGRTANDVKNFWHTKMRKAAEENQRKKKAAEEVSIITEDTAKVKVQQVVQVIKPRPHTFSENSPWLRNKSYELGSASESASSSSFAAQPGPPAADSGKSEAEEEWWENLLKSAGGDDEGQEGNFMVDFFDQDFLRMEGLHHWWSH 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2003 237 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Prci2g2003 237 Gene3D - 10 62 - -
Prci2g2003 237 CDD SANT 12 57 IPR001005 -
Prci2g2003 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Prci2g2003 237 MobiDBLite consensus disorder prediction 172 214 - -
Prci2g2003 237 CDD SANT 65 106 IPR001005 -
Prci2g2003 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Prci2g2003 237 MobiDBLite consensus disorder prediction 189 203 - -
Prci2g2003 237 FunFam Myb transcription factor 10 62 - -
Prci2g2003 237 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Prci2g2003 237 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Prci2g2003 237 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Prci2g2003 237 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 175 - -
Prci2g2003 237 Gene3D - 65 136 - -
Prci2g2003 237 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Prci2g2003 237 SMART sant 62 110 IPR001005 -
Prci2g2003 237 SMART sant 9 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2003 Prci-Chr2 15189799 15190730 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2003 8 228 MYB Transcription Factor Family AT1G66370 42.149 2.00e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g2003 Myb_DNA-binding 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2003 - K09422 pcin:129304058 265.003