Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1999 ATGGCTCTTGAGTACCACAAATCTGTGCTTGAGGAAGAAGATGGGTTCAGCAACGATTCTGCCACTACCCATTCTCCTTCTCCTCCTCCTCCTCCTCTGAGTGGGACTGAAAGTGGGTTGGTTTATAAGGCCATAAGCTATCATCCTGAGGAAGCACAGTCTCTAATCAACTTCAAAGCCAATAATGGTGGGTATAACACTGTCATGAATGGTGGTGAATCTTTGCTTAGCTTTCAGCAGAAAGAGTACTGTGTGTGGGAGAATAATAATGGTTTGCACCAGTGGAATCAGATTAGTAGCCCCAGAGCCACCACTTCAGACCAAAGACTGATTCAGGATTTTAATTGCATTCAAACTGCTAGTGGCCATGGAGGAGGAGGATCATCCTCCGTAGCCAATGATAACAATGGTGCAAAAAAGAAGCAGCAGCAAGGTGAGAGTACATATGGGTGGCTCTACTCTGAACTAAATGTTCCTTCTGATAACAGCCTTCAGGATTCTTCAGGAGCAAAAGAAGCATCTTTCCATAAGCGCCTTTCGATGGGAGAGAGCATGCAGGCCTCGAAGAAGCAATGCACTGCTAGTAATGCTGCAAGTAAAACAACGAAACCAACAAAGTCAAACTCATCTAAGGATACTCAGAGTATTGCAGCCAAGAATAGAAGAGAGAGGATTAGCGAGAGACTCAAGATACTACAAGAACTAGTTCCTAATGGCTCCAAGGTTGATTTGGTGACCATGTTGGAGAAAGCCATTAGTTATGTGAAGTTTCTTCAACTGCAAGTGAAGGTACTGGCAACTGATGAATTTTGGCCAGTCCAAGGAGGAAAAGCACCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCCATTCTTTCATCCCAGAGAGACAGGAACTCAACCTCAATGCATCAGTTATGA 921 0.4387 MALEYHKSVLEEEDGFSNDSATTHSPSPPPPPLSGTESGLVYKAISYHPEEAQSLINFKANNGGYNTVMNGGESLLSFQQKEYCVWENNNGLHQWNQISSPRATTSDQRLIQDFNCIQTASGHGGGGSSSVANDNNGAKKKQQQGESTYGWLYSELNVPSDNSLQDSSGAKEASFHKRLSMGESMQASKKQCTASNAASKTTKPTKSNSSKDTQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEAIDAILSSQRDRNSTSMHQL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1999 306 MobiDBLite consensus disorder prediction 1 37 - -
Prci2g1999 306 MobiDBLite consensus disorder prediction 181 221 - -
Prci2g1999 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
Prci2g1999 306 FunFam Transcription factor bHLH83 207 266 - -
Prci2g1999 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 268 IPR036638 GO:0046983
Prci2g1999 306 Gene3D - 203 266 IPR036638 GO:0046983
Prci2g1999 306 Pfam Helix-loop-helix DNA-binding domain 213 259 IPR011598 GO:0046983
Prci2g1999 306 MobiDBLite consensus disorder prediction 121 145 - -
Prci2g1999 306 MobiDBLite consensus disorder prediction 184 215 - -
Prci2g1999 306 MobiDBLite consensus disorder prediction 1 18 - -
Prci2g1999 306 SMART finulus 215 264 IPR011598 GO:0046983
Prci2g1999 306 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 293 - -
Prci2g1999 306 CDD bHLH_AtIND_like 210 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1999 Prci-Chr2 15120962 15122676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1999 151 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G66470 70.861 1.58e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci2g1999 HLH 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1999 - - gmx:100810010 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1999 2 15120962 15122676 Prci2g1999 2 15120962 15122676 CCT
Prci2g1999 2 15120962 15122676 Prci2g1999 2 15120962 15122676 ECH