Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1998 ATGGACATTTCTTCTTCTTCTTCTTCCTCGTCCTCTTCCTCCGGCGCTCTCAGTCCTGACGCTAATCTCGATGCCGACACCCCCCGGACGCCCCTTGCCGTCCGGGGAGCCCTCCAGCTCCTCCAATCTAACGACCGCGATTTCATGCTCCAAGCCGCTCGCGATATTCGCCGCCTCACTAAAACCTCGCAGCGCTGTCGCCGCCAGCTCTCTCAGGCTGTTGGTCCCCTCGTTTCCATGCTCCGATTCGACTCCTCCGAGTTCCACGAATCCGCTCTTCTCGCTTTGCTCAACCTTGCTGTTAAAGATGAAAAGAACAAAATCAGCATTGTGGAAGCTGGTGCTTTAGAACCAATAATATCTTTCCTGAAGTCACAAAATATAAACCTGCAAGAGTGTGCCACTGCATCTCTGCTCACTTTATCTGCCTCTGCAACCAACAAACCAATCATTTGTGCTTCTGGAGCCATTCCTCTTCTTGTGGAGATCCTCAGAGATGGAAGCCCACAGGCTAAAGCTGATGCAGTAATGGCCCTTTCCAATCTATCCACCCACCCTGACAATCTCAGCGCCATTCTTGAAACAAATCCAATTCCTTTCATAGTTGATCTTCTCAAAACCTGTAAAAAATCCTCAAAAACAGCCGAGAAGTGCTGCGCTTTGATAGAATCCTTGGTGGGTTTTGGTGAGGGGAGGACTGCCTTGACATCTGAAGAAGGCGCGGTGCTTGCAGTTGTAGAAGTTCTTGAAAACGGCAATCTCCAGAGCAGGGAGCACGCAGTCGGAGCATTGTTAATGATGTGCGAAAGTGATCGATGTAAATACAGGGAACCAATCCTCAGAGAAGGTGTCATTCCAGGACTTCTGGAGCTGACAGTACAAGGAACCCCCAAGTCTCAGTTAAAAGCCCGTAACCTTCTGCAACTACTGAGGGAAACTCCTTATCCCAGATCTGAAATTCAACCTGACACTCTTGAGAACATCGTGTGCAATATTATATCCCAGATTGATGGCGATGAACAGTCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTTCAAGTCAGCATGGAACAGAGCCTGAGACATTTACAGCAAAGGGCTCTGGTGTTCACCCCAACAAGTGATCGGCCTGTTACTAACTGTGCTTCTGAAGTATCTTCAAAATGA 1170 0.4863 MDISSSSSSSSSSSGALSPDANLDADTPRTPLAVRGALQLLQSNDRDFMLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRFDSSEFHESALLALLNLAVKDEKNKISIVEAGALEPIISFLKSQNINLQECATASLLTLSASATNKPIICASGAIPLLVEILRDGSPQAKADAVMALSNLSTHPDNLSAILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVGFGEGRTALTSEEGAVLAVVEVLENGNLQSREHAVGALLMMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARNLLQLLRETPYPRSEIQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVSMEQSLRHLQQRALVFTPTSDRPVTNCASEVSSK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1998 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 156 IPR000225 GO:0005515
Prci2g1998 389 SMART arm_5 144 184 IPR000225 GO:0005515
Prci2g1998 389 SMART arm_5 103 143 IPR000225 GO:0005515
Prci2g1998 389 SMART arm_5 62 101 IPR000225 GO:0005515
Prci2g1998 389 SMART arm_5 185 227 IPR000225 GO:0005515
Prci2g1998 389 MobiDBLite consensus disorder prediction 1 20 - -
Prci2g1998 389 SUPERFAMILY ARM repeat 37 338 IPR016024 -
Prci2g1998 389 FunFam U-box domain-containing protein 4 20 370 - -
Prci2g1998 389 Pfam Armadillo/beta-catenin-like repeat 147 183 IPR000225 GO:0005515
Prci2g1998 389 Pfam Armadillo/beta-catenin-like repeat 104 138 IPR000225 GO:0005515
Prci2g1998 389 PANTHER U BOX DOMAIN-CONTAINING 33 317 - -
Prci2g1998 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 155 197 IPR000225 GO:0005515
Prci2g1998 389 Gene3D - 17 371 IPR011989 -
Prci2g1998 389 MobiDBLite consensus disorder prediction 1 28 - -
Prci2g1998 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 72 114 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1998 Prci-Chr2 15093996 15097524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1998 34 311 U-box Gene Family AT2G23140 34.643 1.54e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1998 - - gmx:100809684 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1998 2 15093996 15097524 Prci2g1998 2 15093996 15097524 CCT
Prci2g1998 2 15093996 15097524 Prci2g1998 2 15093996 15097524 ECH