Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1987 ATGCATATTCCATCCAATCTTCATGATAAACGCGATAAGATGCGGAGGTACAGCCCAGCATACTATAGTCCTCCTAGGAGAGCATACGGTGGTGGAGGGAGAAGCCCTCCCAGGAGGGGCTATGGTGGAGGCAGACGCAGGGAACAAAATCATGGGAGCCTTTTGGTTCGGAACATTCCTCTCGATTGCCGACCAGAGGAACTTCGAGTTCCATTTGAGCGATTTGGACCTGTCCGGGATGTTTACCTACCAAAGGACTATTATACTGGAGAACCTCGTGGATTTGCATTTGTGCAATTTGTGGATCCTTATGATGCTTCAGAGGCACAATATCATATGAATGGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTTGCTGCAGAGTCAAGGAAAAGGCCAGAAGAGATGCGTCAGAAGTCAAGGATGAGAGGACCAGTAGGCTATGGGGGGAGAAGGTCGGCTTATTATGGACGATCCCGATCTCGTTCAGTTTCAAGATCACGCTCCCCACATTATCGCTCTGGTTCTAGAAGTAGATACCATTCAAGGTCATATTCTCCTGCTCCAAGAAGGCGAGGTGACTATTCTGTTTCCCCTAAACCACGTGATGCGCACCCTAGATCACCACGAGGTCCTTCTGTGGAGCGAGATGGTGATCAGAAGCGCAGGTCATACTCTCCAGGTTATGGCAATGGTCCAGATTATGATACTGTCAATGGATATGAGAAATCTGTGTATAACTCTGAGGCTGCACGAGACCAGTGGGGGCAATCACCACGCAGAGCATCAAGATCACCCATTGGGTCAAGATCAAGGTCTGCTGATTTGTCTCCCAGACATGGCAGATGA 855 0.4854 MHIPSNLHDKRDKMRRYSPAYYSPPRRAYGGGGRSPPRRGYGGGRRREQNHGSLLVRNIPLDCRPEELRVPFERFGPVRDVYLPKDYYTGEPRGFAFVQFVDPYDASEAQYHMNGQIFAGREISVVVAAESRKRPEEMRQKSRMRGPVGYGGRRSAYYGRSRSRSVSRSRSPHYRSGSRSRYHSRSYSPAPRRRGDYSVSPKPRDAHPRSPRGPSVERDGDQKRRSYSPGYGNGPDYDTVNGYEKSVYNSEAARDQWGQSPRRASRSPIGSRSRSADLSPRHGR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1987 284 MobiDBLite consensus disorder prediction 197 225 - -
Prci2g1987 284 MobiDBLite consensus disorder prediction 166 180 - -
Prci2g1987 284 MobiDBLite consensus disorder prediction 1 17 - -
Prci2g1987 284 MobiDBLite consensus disorder prediction 130 284 - -
Prci2g1987 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Prci2g1987 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 123 IPR000504 GO:0003723
Prci2g1987 284 SUPERFAMILY RNA-binding domain, RBD 49 159 IPR035979 GO:0003676
Prci2g1987 284 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 236 - -
Prci2g1987 284 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 45 186 - -
Prci2g1987 284 MobiDBLite consensus disorder prediction 1 50 - -
Prci2g1987 284 SMART rrm1_1 53 126 IPR000504 GO:0003723
Prci2g1987 284 Gene3D - 44 188 IPR012677 -
Prci2g1987 284 MobiDBLite consensus disorder prediction 252 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1987 Prci-Chr2 14977434 14981948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1987 20 115 Eukaryotic Initiation Factors Gene Family AT3G11400 37.500 6.96e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1987 K12900 - gmx:100804294 318.546