Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1985 ATGCGGAGGTACAGCCCAGCATACTATAGTCCTCCTAGGAGAGCATACGGTGGTGGAGGGAGAAGCCCTCCCAGGAGGGGCTATGGTGGAGGCAGACGCAGGGAACAAAATCATGGGAGCCTTTTGGTTCGGAACATTCCTCTCGATTGCCGACCAGAGGAACTTCGAGTTCCATTTGAGCGATTTGGACCTGTCCGGGATGTTTACCTACCAAAGGACTATTATACTGGAGAACCTCGTGGATTTGCATTTGTGCAATTTGTGGATCCTTATGATGCTTCAGAGGCACAATATCATATGAATGGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTTGCTGCAGAGTCAAGGAAAAGGCCAGAAGAGATGCGTCAGAAGTCAAGGATGAGAGGACCAGTAGGCTATGGGGGGAGAAGGTCGGCTTATTATGGACGATCCCGATCTCGTTCAGTTTCAAGATCACGCTCCCCACATTATCGCTCTGGTTCTAGAAGTAGATACCATTCAAGGTCATATTCTCCTGCTCCAAGAAGGCGAGGTGACTATTCTGTTTCCCCTAAACCACGTGATGCGCACCCTAGATCACCACGAGGTCCTTCTGTGGAGCGAGATGGTGATCAGAAGCGCAGGTCATACTCTCCAGGTTATGGCAATGGTCCAGATTATGATACTGTCAATGGATATGAGAAATCTGTGTATAACTCTGAGGCTGCACGAGACCAGTGGGGGCAATCACCACGCAGAGCATCAAGATCACCCATTGGGTCAAGATCAAGGTCTGCTGATTTGTCTCCCAGACATGGCAGATGA 816 0.4914 MRRYSPAYYSPPRRAYGGGGRSPPRRGYGGGRRREQNHGSLLVRNIPLDCRPEELRVPFERFGPVRDVYLPKDYYTGEPRGFAFVQFVDPYDASEAQYHMNGQIFAGREISVVVAAESRKRPEEMRQKSRMRGPVGYGGRRSAYYGRSRSRSVSRSRSPHYRSGSRSRYHSRSYSPAPRRRGDYSVSPKPRDAHPRSPRGPSVERDGDQKRRSYSPGYGNGPDYDTVNGYEKSVYNSEAARDQWGQSPRRASRSPIGSRSRSADLSPRHGR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1985 271 SUPERFAMILY RNA-binding domain, RBD 36 146 IPR035979 GO:0003676
Prci2g1985 271 MobiDBLite consensus disorder prediction 239 261 - -
Prci2g1985 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Prci2g1985 271 MobiDBLite consensus disorder prediction 153 167 - -
Prci2g1985 271 MobiDBLite consensus disorder prediction 184 212 - -
Prci2g1985 271 SMART rrm1_1 40 113 IPR000504 GO:0003723
Prci2g1985 271 MobiDBLite consensus disorder prediction 1 39 - -
Prci2g1985 271 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 32 173 - -
Prci2g1985 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Prci2g1985 271 Gene3D - 31 175 IPR012677 -
Prci2g1985 271 MobiDBLite consensus disorder prediction 117 271 - -
Prci2g1985 271 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 39 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1985 Prci-Chr2 14977434 14982017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1985 7 102 Eukaryotic Initiation Factors Gene Family AT3G11400 37.500 6.67e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1985 K12900 - gmx:100804294 318.546