Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci2g1985 | ATGCGGAGGTACAGCCCAGCATACTATAGTCCTCCTAGGAGAGCATACGGTGGTGGAGGGAGAAGCCCTCCCAGGAGGGGCTATGGTGGAGGCAGACGCAGGGAACAAAATCATGGGAGCCTTTTGGTTCGGAACATTCCTCTCGATTGCCGACCAGAGGAACTTCGAGTTCCATTTGAGCGATTTGGACCTGTCCGGGATGTTTACCTACCAAAGGACTATTATACTGGAGAACCTCGTGGATTTGCATTTGTGCAATTTGTGGATCCTTATGATGCTTCAGAGGCACAATATCATATGAATGGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTTGCTGCAGAGTCAAGGAAAAGGCCAGAAGAGATGCGTCAGAAGTCAAGGATGAGAGGACCAGTAGGCTATGGGGGGAGAAGGTCGGCTTATTATGGACGATCCCGATCTCGTTCAGTTTCAAGATCACGCTCCCCACATTATCGCTCTGGTTCTAGAAGTAGATACCATTCAAGGTCATATTCTCCTGCTCCAAGAAGGCGAGGTGACTATTCTGTTTCCCCTAAACCACGTGATGCGCACCCTAGATCACCACGAGGTCCTTCTGTGGAGCGAGATGGTGATCAGAAGCGCAGGTCATACTCTCCAGGTTATGGCAATGGTCCAGATTATGATACTGTCAATGGATATGAGAAATCTGTGTATAACTCTGAGGCTGCACGAGACCAGTGGGGGCAATCACCACGCAGAGCATCAAGATCACCCATTGGGTCAAGATCAAGGTCTGCTGATTTGTCTCCCAGACATGGCAGATGA | 816 | 0.4914 | MRRYSPAYYSPPRRAYGGGGRSPPRRGYGGGRRREQNHGSLLVRNIPLDCRPEELRVPFERFGPVRDVYLPKDYYTGEPRGFAFVQFVDPYDASEAQYHMNGQIFAGREISVVVAAESRKRPEEMRQKSRMRGPVGYGGRRSAYYGRSRSRSVSRSRSPHYRSGSRSRYHSRSYSPAPRRRGDYSVSPKPRDAHPRSPRGPSVERDGDQKRRSYSPGYGNGPDYDTVNGYEKSVYNSEAARDQWGQSPRRASRSPIGSRSRSADLSPRHGR | 271 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci2g1985 | 271 | SUPERFAMILY | RNA-binding domain, RBD | 36 | 146 | IPR035979 | GO:0003676 | |
Prci2g1985 | 271 | MobiDBLite | consensus disorder prediction | 239 | 261 | - | - | |
Prci2g1985 | 271 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 41 | 110 | IPR000504 | GO:0003723 | |
Prci2g1985 | 271 | MobiDBLite | consensus disorder prediction | 153 | 167 | - | - | |
Prci2g1985 | 271 | MobiDBLite | consensus disorder prediction | 184 | 212 | - | - | |
Prci2g1985 | 271 | SMART | rrm1_1 | 40 | 113 | IPR000504 | GO:0003723 | |
Prci2g1985 | 271 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Prci2g1985 | 271 | FunFam | Serine/arginine-rich SC35-like splicing factor SCL30 isoform A | 32 | 173 | - | - | |
Prci2g1985 | 271 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 39 | 117 | IPR000504 | GO:0003723 | |
Prci2g1985 | 271 | Gene3D | - | 31 | 175 | IPR012677 | - | |
Prci2g1985 | 271 | MobiDBLite | consensus disorder prediction | 117 | 271 | - | - | |
Prci2g1985 | 271 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 39 | 246 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci2g1985 | Prci-Chr2 | 14977434 | 14982017 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci2g1985 | 7 | 102 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 37.500 | 6.67e-09 | 53.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci2g1985 | K12900 | - | gmx:100804294 | 318.546 |