Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1971 ATGAGTTTTATTTTGAGAGGAACAAGAGCAGACATAGAAAGTGGATTTCCTGGATTTATTCCTGAGAGGCATGCATTGCGTGTTCATGCAGCACGACCTGCTAATTCCAATTCTCTCACTTTTCTTGTCACAGTTCTTCTGCTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGCTTTGGCTGGTCCTAGGTGTCTTCTTGATGGCTACAATGTTAAGGATGTATGCAACTTGTCAGCAACTTCAAGCTGAGGCTCATGCCCATACAGCAGCGGGCAGCGGTGGCCTTCTTGGGCACACTGAAGTACGATTACATGTGCCATCATCAATGGCACTTACCACCCGAGGACGTCTACAAGGCCTTAGGCTTCAGCTTGCACTTCTTGACCGGGAGTTTGATGATTTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGCTCCGCCAGCACCTTCCATGACTGATGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGGTTCTGGTCTCCAGAACAGGAAATCCTCAATGCAACAGACCTCATCTTCCACCTTTGCTGAGAAGAAGCAAGATGCGTCAAATGCAGTTGGTAGTACAAAGGCCTCTGATGATGAGCTGACCTGCAGTGTATGTTTGGAGCAAGTTAACGTTGATCTACTCCGTAGCTTGCCCTGCTTACATCAGTTTCATGCCAATTGCATTGACCCATGGCTGCGGCAACAAGGGACGTGTCCTGTCTGTAAATTCAGAGCAGGATCTACGTGGCATGAGAGTGAACAGAATGAAGTTGATGCTTCAGACATGGTTTGA 828 0.4565 MSFILRGTRADIESGFPGFIPERHALRVHAARPANSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAEAHAHTAAGSGGLLGHTEVRLHVPSSMALTTRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPPAPSMTDEEINALPVHKYKGSGLQNRKSSMQQTSSSTFAEKKQDASNAVGSTKASDDELTCSVCLEQVNVGXLLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSTWHESEQNEVDASDMV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1971 276 Pfam Ring finger domain 213 255 IPR001841 -
Prci2g1971 276 CDD RING-H2_PA-TM-RING 213 255 - -
Prci2g1971 276 MobiDBLite consensus disorder prediction 175 197 - -
Prci2g1971 276 SUPERFAMILY RING/U-box 209 258 - -
Prci2g1971 276 PANTHER TARGET OF ERK KINASE MPK-1 5 260 - -
Prci2g1971 276 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Prci2g1971 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 260 IPR013083 -
Prci2g1971 276 SMART ring_2 214 254 IPR001841 -
Prci2g1971 276 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1971 Prci-Chr2 14800979 14807545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1971 1 276 C3H Transcription Factor Family AT3G55530 73.285 6.87e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1971 K16283 - gmx:100777936 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1971 2 14800979 14807545 Prci2g1971 2 14800979 14807545 ECH