Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1970 ATGGCTTCGGGGACGTCATCTTCTTATTGGTGCTACAGATGCAGTCGGTTTGTGAGGGTGCGGAGGCAGGACGCTGTGGTGTGTCCCGACTGCGACAGTGGATTCGTGGAGGAGATTGAGCAAATGCCTCGGCCTGCCTCCATCGTTGATTCGCGGCGGCGGAGGTTCCCGGCGGCTTCCATGTACATGATCGGCAACCGCCACCACCCCAATTCTGGACAGACTCTGCGTCCTGCGTTGAGGAGGGCTCGTCGGAGCGGTGGCGATCTTGCTATGGTTAATCCGGTTGTCGTGCTCCGCGGCTCCCCTCAACGGGCGAGTCATGATTCCGGTGGAGGACACGGGCGTGGGTTCGAGCTTTACTACGAAGACGGCTCTGGTTCCGGTCTCCGGCCTTTGCCTTCGAATATGTCAGAGATGCTTCTGGGATCTGGAATCGACAGGCTTCTGGAACAGCTTTCTCAGATTGAAATGAACGGGATTTCTCGATACGAACCACCTCCGGTTTCCAAAGCCGCTATCGATTCATTGCCGACGATAGAGATTCATGAGGATCATCTGGCGACGGAATCACACTGTGCCGTCTGTATGGAGCCTTTTGAATCGGGCACAACTGCTCGCGAATTGCCTTGCAGGCACATTTATCATTCGGAATGCATCTTGCCGTGGCTTGCGCTCCGGAATACTTGCCCTGTTTGCCGGCAGGAGCTCCCGGCAGATACGCAGAACGTTAACGCTTCTGGGCATTCCCTCACTTGGAACGACGATGACAACGTGGGATTAACCATTTGGAGGCTTCCCGGCGGTGGCTTCGCTGTGGGCAGGTTCGCTGGTGGGAGAAGAAGTTCTTCTGATCGTGAGCTTCCTGCTGTGTATACAGAAATGGACGGTGGTATTGGAAACGGCGGCGAACCGAGGAGGGTGACTTGGTCGACGACGGAGGAGGATCGAGGAAGGGACAGAAGAGCTGGAGGATTTCGCAAAATGTTTCGCAATCTTTTTGGTTGCTTCACTCCTGGAGCTCGAGCTCACCCCTCTGCTTCATCATCATCATCATCATCTTCTTCTCCAGAACCTCGAACCTTCAGGAGTAGTACTTCTCGTTATCGTCCCGTCGTGAATACCACAACACGTTCCCGAAGGACCTGGTCTCTGGACGGCAATGGCGGAACCAGACCTTGGTGA 1185 0.5527 MASGTSSSYWCYRCSRFVRVRRQDAVVCPDCDSGFVEEIEQMPRPASIVDSRRRRFPAASMYMIGNRHHPNSGQTLRPALRRARRSGGDLAMVNPVVVLRGSPQRASHDSGGGHGRGFELYYEDGSGSGLRPLPSNMSEMLLGSGIDRLLEQLSQIEMNGISRYEPPPVSKAAIDSLPTIEIHEDHLATESHCAVCMEPFESGTTARELPCRHIYHSECILPWLALRNTCPVCRQELPADTQNVNASGHSLTWNDDDNVGLTIWRLPGGGFAVGRFAGGRRSSSDRELPAVYTEMDGGIGNGGEPRRVTWSTTEEDRGRDRRAGGFRKMFRNLFGCFTPGARAHPSASSSSSSSSSPEPRTFRSSTSRYRPVVNTTTRSRRTWSLDGNGGTRPW 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1970 394 Pfam Protein of unknown function (DUF1117) 259 370 IPR010543 -
Prci2g1970 394 FunFam E3 ubiquitin-protein ligase RING1-like 155 240 - -
Prci2g1970 394 MobiDBLite consensus disorder prediction 309 324 - -
Prci2g1970 394 SMART ring_2 193 233 IPR001841 -
Prci2g1970 394 MobiDBLite consensus disorder prediction 278 324 - -
Prci2g1970 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Prci2g1970 394 MobiDBLite consensus disorder prediction 343 386 - -
Prci2g1970 394 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Prci2g1970 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 238 - -
Prci2g1970 394 MobiDBLite consensus disorder prediction 341 394 - -
Prci2g1970 394 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Prci2g1970 394 Pfam Ring finger domain 192 234 IPR001841 -
Prci2g1970 394 SUPERFAMILY RING/U-box 173 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1970 Prci-Chr2 14790366 14792488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1970 130 243 C3H Transcription Factor Family AT5G01980 40.351 1.80e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1970 K11982 - qsa:O6P43_014338 484.567