Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1940 ATGGCGAATCGGTGGTGGGCTGGTAACGTGGCAATGAGACCTAAAGATCCCTTGATGTCTTCTTCATCACTTCATCTGAGAAATCCGCAAGATGACCGTGGCGGATTGAATCAACTCGGGCCGAGACGAGAGCAAGACTTCCTGGAAAACACCAACAATATCACGACACCGACCCATAGCAGCAACAGCAACACTAACGCCAACACAAACACAACTTCGCATAGCCAGAACGTCGACGACGACGAGAGCCGACATAATGGCCGCGAGGCTGATGACCAAAACCCAGGTAGCCACGACGTTGCCGAGCCGGGAAGCAGTGGCCGACGTCCCCGAGGCCGACCGCCTGGGTCGAAGAACAAGCCGAAGGCACCGGTCGTTGTAACCAAAGAGAGTCCCAACGCCCTCCGGAGCCACGTGCTGGAAATCTCCAGCGGCAGCGATGTTGCCGAGAGCCTCTCCACCTTCGCGAACCGGAGGCACCGTGGGGTGTCGGTGCTTAGCGGAAGTGGCATTGTGACCAACGTCACGCTCCGGCATCCGGCGGCCCCAGGTGGGGTTATCACACTAAATGGAAGGTTCGAGATTCTGTCACTATCCGGAGCGTTTTTGCCGGCCCCTTCGCCGCCCGGGGCCACTGGACTGACAGTGTATCTAGCCGGCGGGCAGGGGCAGGTTGTTGGTGGAAATGTGGTGGGTTCACTAGTAGCATCGGGTCCTGTATTGGTGATTGCAGCCACATTCGCTAATGCCACTTATGAAAGATTGCCACTTGAGGACGAGCCATCGGGGGAAGAAGTTGAAGTACAAGCACAGCAACAATCAGGAGTAAACTCTGGAACTTCTGGGCTTTCAGCATCTCAAGCTATGAATGAACAGGTTTCAATGCCTATGTTCAATAATATGAACCCAAATTTGCTACCAGGTAATGATCAGATGCCACACGATGTGTTCTGGGGGCCTCCTGCTCGCCAACCTCCTTACTGA 984 0.5508 MANRWWAGNVAMRPKDPLMSSSSLHLRNPQDDRGGLNQLGPRREQDFLENTNNITTPTHSSNSNTNANTNTTSHSQNVDDDESRHNGREADDQNPGSHDVAEPGSSGRRPRGRPPGSKNKPKAPVVVTKESPNALRSHVLEISSGSDVAESLSTFANRRHRGVSVLSGSGIVTNVTLRHPAAPGGVITLNGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGNVVGSLVASGPVLVIAATFANATYERLPLEDEPSGEEVEVQAQQQSGVNSGTSGLSASQAMNEQVSMPMFNNMNPNLLPGNDQMPHDVFWGPPARQPPY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1940 327 Gene3D - 135 274 - -
Prci2g1940 327 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 248 IPR005175 -
Prci2g1940 327 MobiDBLite consensus disorder prediction 77 96 - -
Prci2g1940 327 CDD DUF296 136 219 IPR005175 -
Prci2g1940 327 MobiDBLite consensus disorder prediction 52 126 - -
Prci2g1940 327 FunFam AT-hook motif nuclear-localized protein 135 262 - -
Prci2g1940 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 66 319 IPR014476 GO:0003680
Prci2g1940 327 MobiDBLite consensus disorder prediction 52 76 - -
Prci2g1940 327 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 259 - -
Prci2g1940 327 MobiDBLite consensus disorder prediction 266 286 - -
Prci2g1940 327 ProSiteProfiles PPC domain profile profile. 132 270 IPR005175 -
Prci2g1940 327 MobiDBLite consensus disorder prediction 13 40 - -
Prci2g1940 327 MobiDBLite consensus disorder prediction 258 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1940 Prci-Chr2 14647240 14649346 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1940 1 326 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 52.959 1.07e-74 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1940 - - qsa:O6P43_020634 423.32