Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1939 ATGGCGAATCGGTGGTGGGCAGGTAACGTGTCAATGAGACCAAAAGATCCCTTGTCTTCTCCATCGCTTCATCTGAGAAATCCAGAGGATAACCATGGCGAGATGAACCGGTTCGGTGCTGTGCGAGAGCAAGACTTCCTGGAAAACACTAACAACACCACTCCGACCAATAGCAGCAACAGCAACACTAACGCCAACACAAACACTACCTCACAGAGCCAGAACGCTGACGACGGCGACAGCCGAGATAACGGCCGCGAAGCTGATGATCAGAACCCGGGCGGCCACGACGGCACTGAGCCGGGCAGCAGCGGTCGCCGGCCCCGGGGCCGCCCTCCTGGGTCAAAAAACAAGCCAAAGCCACCGGTGGTGGTAACCAAGGAGAGTCCTAACGCCCTCCGCAGCCACGTGTTGGAAATATCCAGCGGCACCGACGTTGCTGAGAGCCTCTCCACCTTCGCTAACCGGAGACATCGTGGGGTCTCGGTGCTCAGCGGAAGTGGCATTGTGACCAATGTCACTCTCCGGCAGCCAGCAGCACCAGGTGGGATTATCACACTACACGGAAGATTCGAGATTCTGTCTCTGTCCGGGGCGTTTTTGCCGGCCCCTTCACCACCTGGGGCCACCGGGCTGACAGTGTATCTAGCCGGCGGACAAGGGCAGGTTGTTGGTGGTGCTGTGGTGGGTTCACTGGTAGCATCAGGTCCTGTATTGGTGATTGCAGCTACATTCGCTAATGCCACGTATGAAAGATTGCCACTTGAGGATGAGCCATCTGGGGAAGAAGTTGAAGTGAAAACCCAGCAACAGTCAGGAGTAAATTCAGGAACTTCTGGGCCTCCTGCAGCAACTCAAGCTATGAACGAACAAGTATCGATGCCTATGTTCAATAATTTGCCTCCTAATTTGCTGCCAAACAATGATCAAATGCAACATGACGTGTTCTGGGGTACCCCTGCTCGCCACCCTCCTTCTTACTGA 984 0.5508 MANRWWAGNVSMRPKDPLSSPSLHLRNPEDNHGEMNRFGAVREQDFLENTNNTTPTNSSNSNTNANTNTTSQSQNADDGDSRDNGREADDQNPGGHDGTEPGSSGRRPRGRPPGSKNKPKPPVVVTKESPNALRSHVLEISSGTDVAESLSTFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGIITLHGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGAVVGSLVASGPVLVIAATFANATYERLPLEDEPSGEEVEVKTQQQSGVNSGTSGPPAATQAMNEQVSMPMFNNLPPNLLPNNDQMQHDVFWGTPARHPPSY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1939 327 Gene3D - 133 272 - -
Prci2g1939 327 ProSiteProfiles PPC domain profile profile. 130 268 IPR005175 -
Prci2g1939 327 MobiDBLite consensus disorder prediction 79 94 - -
Prci2g1939 327 FunFam AT-hook motif nuclear-localized protein 133 260 - -
Prci2g1939 327 CDD DUF296 134 216 IPR005175 -
Prci2g1939 327 MobiDBLite consensus disorder prediction 45 78 - -
Prci2g1939 327 PIRSF ESCAROLA 44 327 IPR014476 GO:0003680
Prci2g1939 327 MobiDBLite consensus disorder prediction 1 129 - -
Prci2g1939 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 63 319 IPR014476 GO:0003680
Prci2g1939 327 MobiDBLite consensus disorder prediction 27 41 - -
Prci2g1939 327 MobiDBLite consensus disorder prediction 256 285 - -
Prci2g1939 327 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 246 IPR005175 -
Prci2g1939 327 MobiDBLite consensus disorder prediction 265 285 - -
Prci2g1939 327 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1939 Prci-Chr2 14628598 14630593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1939 1 327 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 53.235 5.57e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1939 - - qsa:O6P43_020634 370.548