Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1904 ATGGCTCCTTCAGAAGTCAATCATCTCTCTCACCCTTGTATATATGGGGATTTTGCTTCCTCATTCTCCGAGAGGAAGTCTGGCTTTATGAAATGGTTTAGTAAGCTTTTCAAAGGTGGGTCCAGTCGAGGAAGGGGAGGTCGTCATCTCCGGCAGGCTACAGAGGAAAATTTGGTTTGGCGTAATCCGGCTAGATCGTTGGATGACCGTTCTCTAGCTGAAGATTTGAAGAGACCAAATGCTCGTCAAGGATATAGATTGGGGGGAGGCATCAATAAAGATTATGCAAGTGAATTTCAGGATAACCAAAACTCATCTGCACATCCTCCATACAGCCGTGCAACATATGGGGAAATTAGAATATGCGGTGGGTGCAAGCAGGAGGTAGACTATGCGAATTGTTTAACATGCAATGATACTCATTTTCATCCATGGTGCTTTCGCTGTCACTCTTGTCGCTACCCCATTACTGAGCATGAGTTTTCTTTATCAGGGAAGCATCCATATCACAAGTCCTGTTTCAAAGAGTTGACCCACCCAAAATGTGAAGTTTGCTACCAATTTATTCCTATAAATGCTGCTGGTTTGATCGAGTATAGGTGTCACCCATTTTGGTCCCAAAAATATTGTCCATCTCATGAATATGACGATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGTCTTTGAATGCAAAATACTATAGCTTGGAAGATGGGCGGAGTTTATGTTTAGAGTGCATGGAGTCAGCTATTATGGACACTGGAGATTGTCAACCTCTTTACCATGATATTAGAGATTATTATGAAGGAATGTTTATGAAAATAGACCAACAAATTCCTATGCTTCTGGTTGAGAGGCAAGCACTCAATGAAGCTATTGTTGGGGATAAAAATGGTTACCATCACATGCCAGAGACAAGAGGCTTGTGCCTTTCTGAAGAGCTGACTGTCACCAGTATTCATCGGAGGCCAAGAATCGGAGGCCGCCAGCTATTTGGGATGAGAACCCAGCCTCAAAAGCTGACTAGAAAATGTGAGGTTACAGCCATTCTTGTTCTCTACGGTCTTCCAAGGTTGCTCACGGGCGCCATCCTTGTCCACGAGTTGATGCACGGCTGGTTACGCCTTAAAGGTTACCGTAATCTTAATCCTCACGTAGAGGAAGGAATCTGTCAGGTTCTGTCTTATATGTGGCTTGAGTCAGTGGTGATGCCTGGCCTTAAGAGCATGCCTTCAACTTCAGCAGCCTCCTCCTCCTCCTCCTCTTCCTACTACCCCTCCTCATCATCTAAGAAAGGAGCCAAGTCTGAAGTTGAGAATAAACTGGGTCAATTTTTCATGAATCAAATTGCCAATGATTCTTCTCCAGCGTATGGGGGTGGATTTAGAGCTGCTAATGAAGCTGTGAACAAATATGGTTTACATCGTACTCTTGATCATATTCGTTTGACTGGTAGTTTCCCACTGTAA 1473 0.4392 MAPSEVNHLSHPCIYGDFASSFSERKSGFMKWFSKLFKGGSSRGRGGRHLRQATEENLVWRNPARSLDDRSLAEDLKRPNARQGYRLGGGINKDYASEFQDNQNSSAHPPYSRATYGEIRICGGCKQEVDYANCLTCNDTHFHPWCFRCHSCRYPITEHEFSLSGKHPYHKSCFKELTHPKCEVCYQFIPINAAGLIEYRCHPFWSQKYCPSHEYDDTARCCSCERLESLNAKYYSLEDGRSLCLECMESAIMDTGDCQPLYHDIRDYYEGMFMKIDQQIPMLLVERQALNEAIVGDKNGYHHMPETRGLCLSEELTVTSIHRRPRIGGRQLFGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILVHELMHGWLRLKGYRNLNPHVEEGICQVLSYMWLESVVMPGLKSMPSTSAASSSSSSSYYPSSSSKKGAKSEVENKLGQFFMNQIANDSSPAYGGGFRAANEAVNKYGLHRTLDHIRLTGSFPL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1904 490 Gene3D Cysteine Rich Protein 114 192 - -
Prci2g1904 490 ProSitePatterns LIM zinc-binding domain signature. 122 156 IPR001781 -
Prci2g1904 490 PANTHER PROTEIN DA1-RELATED 2 32 489 IPR045218 -
Prci2g1904 490 ProSiteProfiles LIM domain profile. 120 180 IPR001781 -
Prci2g1904 490 Pfam Protein DA1 271 485 IPR022087 -
Prci2g1904 490 SMART lim_4 121 173 IPR001781 -
Prci2g1904 490 CDD LIM_DA1 122 174 - -
Prci2g1904 490 MobiDBLite consensus disorder prediction 414 433 - -
Prci2g1904 490 Pfam LIM domain 122 175 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1904 Prci-Chr2 14372203 14377463 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci2g1904 DA1-like 1.1e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1904 - - gmx:100784976 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1904 2 14372203 14377463 Prci2g1904 2 14372203 14377463 CCT
Prci2g1904 2 14372203 14377463 Prci2g1904 2 14372203 14377463 ECH