Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1878 ATGATGATCACGGAGAAGTCTCATGTTGTTGATATAGACAATTGTCGTCGGCGTAGCAGCTCCGACGGTGGAGGTGGCGGGCATCCAGACGCTGCCGATGGTGCAGACAAGGAGCAAAGGTCCTCCCACGAGGCTTCTGGTGCCGAGATTGTGAGAGTGTCGGAAAAAGACAAGGGATCCCCTGCATCGGAGAGTTCGGTTGAGGTGGATTTGGGGAATGCGGCGACGGAAGTGAAGGTACATTCGGGTACGGTGAAGAGGGATTGCAGGATTTGTCATCTTAGTATGGACATGACTAATCATGAATCTGGGAGCATTGAGCTAGGATGTTCTTGCAAGGACGATTTGGTTGCAGCTCACAAGCAATGTGCCGAGGCTTGGTTCAAGATCAAGGGAAACAAAACCTGTGAAATCTGTGGATCAATTGCGCACAATGTAACTGGAGCTTTTGAAGTTGAAACAGTTGAACAGTGGAACGAGGCAAACGATGCCACCATGGCACCCCCTACTGGACCTGCGTCCCATGCTGAAAATCGAAGTTTCTGGAGGGGCCACAGATTCTTGAATTTCCTGCTAGCCTGTATGGTCTTTGCCTTTGTCATATCTTGGCTTTTTCACTTCAATGTACCCTCATGA 636 0.4969 MMITEKSHVVDIDNCRRRSSSDGGGGGHPDAADGADKEQRSSHEASGAEIVRVSEKDKGSPASESSVEVDLGNAATEVKVHSGTVKRDCRICHLSMDMTNHESGSIELGCSCKDDLVAAHKQCAEAWFKIKGNKTCEICGSIAHNVTGAFEVETVEQWNEANDATMAPPTGPASHAENRSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1878 211 MobiDBLite consensus disorder prediction 1 69 - -
Prci2g1878 211 MobiDBLite consensus disorder prediction 31 63 - -
Prci2g1878 211 Pfam RING-variant domain 89 139 IPR011016 GO:0008270
Prci2g1878 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 148 IPR013083 -
Prci2g1878 211 ProSiteProfiles Zinc finger RING-CH-type profile. 81 146 IPR011016 GO:0008270
Prci2g1878 211 PANTHER ZINC FINGER, RING-CH-TYPE 15 210 - -
Prci2g1878 211 SMART ringv_2 88 140 IPR011016 GO:0008270
Prci2g1878 211 SUPERFAMILY RING/U-box 85 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1878 Prci-Chr2 14092418 14095175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1878 19 211 C3H Transcription Factor Family AT5G05830 57.436 2.89e-67 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1878 - - gmx:100818979 290.041