Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1864 ATGGAAACTCTGTACCCACCTTCTTTTATGCCAAACTCAGACTGGTTCGTGCAAGAGAGCATCAACAACACAGAATGGACGAGAGAAGAGAACAAGAGGTTTGAAAGTGCCCTTGCCATATACGACAAGGACACCCCAGATAGGTGGCTAAATGTGGCAGCCATGATCCCCGGAAAAACCGTGTGCGATGTCATCAAGCAGTACAGAGAACTTGTAGAAGACATCGGCGAAATCGAAGCCGGTCGGGTCCCAATTCCTGGCTACCTGGGTTCTTCTTTCACCTTTGAGCTGGTCGATCACCCGAATTATGATGCATACAGAAAGAGGCCCGTGGCTTTCAAGGGTTCTGATCACGAGAGAAAGAAAGGGGTCCCTTGGACTGAAGAAGAACACAGGCGTTTTCTGATGGGCCTTCTTAAGTATGGTAAAGGGGATTGGAGGAACATCTCAAGAAACTTTGTGGTGACAAAGACACCAACCCAAGTGGCGAGTCATGCTCAGAAGTACTACATAAGGCAGAAGCTGTCTTCTGGAGGGAACAACAAAAGGAGACCAAGTATACACGACATAACCATTGTCAATCTCACAGAATCTGCCAACCCACAAGACAACATGCCCCTTCAGTTGAATGATCAGTCTTCTATGTTCTCACCAAATCAGAAGCCAAATGATGGGGTTTTCAACCCTAGTTGTGACAGTTTATTGCATTCATCTTCATCTGATATTGATCGTGCCCTTCATGAGGCTTTTGGTTGCACCAACCTCAAAAACCAGGGTTTTAGGGCAAATTCAGGGGACTTCAATAACCCAGCTGTTTTAGGTATTCATGCATTGTAA 837 0.46 METLYPPSFMPNSDWFVQESINNTEWTREENKRFESALAIYDKDTPDRWLNVAAMIPGKTVCDVIKQYRELVEDIGEIEAGRVPIPGYLGSSFTFELVDHPNYDAYRKRPVAFKGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSSGGNNKRRPSIHDITIVNLTESANPQDNMPLQLNDQSSMFSPNQKPNDGVFNPSCDSLLHSSSSDIDRALHEAFGCTNLKNQGFRANSGDFNNPAVLGIHAL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1864 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 174 IPR017930 -
Prci2g1864 278 SMART sant 122 172 IPR001005 -
Prci2g1864 278 SMART sant 22 74 IPR001005 -
Prci2g1864 278 ProSiteProfiles Myb-like domain profile. 18 72 IPR001005 -
Prci2g1864 278 ProSiteProfiles Myb-like domain profile. 118 170 IPR001005 -
Prci2g1864 278 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 19 226 IPR043363 -
Prci2g1864 278 ProSiteProfiles SANT domain profile. 126 174 IPR017884 -
Prci2g1864 278 Gene3D - 18 85 - -
Prci2g1864 278 FunFam transcription factor MYB1R1 124 175 - -
Prci2g1864 278 NCBIfam myb-like DNA-binding domain, SHAQKYF class 121 173 IPR006447 GO:0003677
Prci2g1864 278 CDD SANT 125 169 IPR001005 -
Prci2g1864 278 Pfam Myb-like DNA-binding domain 125 169 IPR001005 -
Prci2g1864 278 CDD SANT 25 72 IPR001005 -
Prci2g1864 278 Gene3D - 124 175 - -
Prci2g1864 278 SUPERFAMILY Homeodomain-like 24 75 IPR009057 -
Prci2g1864 278 FunFam Transcription factor SRM1 18 85 - -
Prci2g1864 278 SUPERFAMILY Homeodomain-like 120 174 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1864 Prci-Chr2 13981509 13983187 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci2g1864 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1864 - - gmx:778039 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1864 2 13981509 13983187 Prci2g1864 2 13981509 13983187 CCT
Prci2g1864 2 13981509 13983187 Prci2g1864 2 13981509 13983187 ECH
Prci13g2445 13 38774924 38777284 Prci2g1864 2 13981509 13983187 ECH
Prci2g1864 2 13981509 13983187 Prci13g2445 13 38774924 38777284 ECH