Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1857 ATGGAAGATGGCATGTCAGGGTTTTGTATCAGAGCAGAAAGTTTCCGGAGAGGTGATAGTGATGGGAACAGTGGAAGTAGTGGGACTAAATGTGGGCGTTGGAATCCCACAACAGAACAGGTTAAGCTTCTTACTGATTTGTTCATGTCTGGACTGAGAACTCCAAGCACCGATCAGATTCAGAAGATCTCCACTGAGCTTAGCTATTATGGCAAGATTGAGAGCAAGAACGTGTTCTATTGGTTTCAGAACCACAAAGCCAGGGAAAGACAGAAGCGTCGCAAGGTCTCATTCCACGACAAGGAGCTCAGTAATATTCGTCGTCAAAACTCCCTGTTATCTTCTACGCACAATTTTGAGGAGGAGAATCAAGTTCGGGAGCCGGAGAGAGTGATAGAGACTCTTCAACTGTTCCCCTTGAATTCACTGGGTGAATCAGAAGCAGAGAAACTGACGGCGCAAGCAAATAAGTATGGAGATGATAGTACGATGTTTCAATCTTCAACGGGGGAACATATAGAAAACCCACCGTTAGATTTGCGCTTAAGCTTTCTGTAA 558 0.448 MEDGMSGFCIRAESFRRGDSDGNSGSSGTKCGRWNPTTEQVKLLTDLFMSGLRTPSTDQIQKISTELSYYGKIESKNVFYWFQNHKARERQKRRKVSFHDKELSNIRRQNSLLSSTHNFEEENQVREPERVIETLQLFPLNSLGESEAEKLTAQANKYGDDSTMFQSSTGEHIENPPLDLRLSFL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1857 185 ProSiteProfiles 'Homeobox' domain profile. 27 92 IPR001356 GO:0003677
Prci2g1857 185 CDD homeodomain 33 93 IPR001356 GO:0003677
Prci2g1857 185 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 18 112 IPR044555 GO:0003700|GO:0099402
Prci2g1857 185 Pfam Homeodomain 31 91 IPR001356 GO:0003677
Prci2g1857 185 SMART HOX_1 29 96 IPR001356 GO:0003677
Prci2g1857 185 SUPERFAMILY Homeodomain-like 32 95 IPR009057 -
Prci2g1857 185 FunFam WUSCHEL-related homeobox 11 30 98 - -
Prci2g1857 185 Gene3D - 30 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1857 Prci-Chr2 13813216 13814309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1857 8 185 Wox Gene Family AT3G11260 54.737 2.09e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Prci2g1857 Homeodomain 2.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1857 - - pvu:PHAVU_008G226100g 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1857 2 13813216 13814309 Prci2g1857 2 13813216 13814309 CCT
Prci2g1857 2 13813216 13814309 Prci2g1857 2 13813216 13814309 ECH