Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1819 ATGTGTGGTGGCTCAAAAACTAAACTTTCTCCCTCTACTAACGATATGGAAATTCGGAAGCAGAATCGCGATGTTCTCTGTAACATCTCAAGTTTGCTTGAGCTGTCTGCAACCGATGATCTCAAAACTTTCAGAAGGGAAGTAGAAGAGAAGGGTTCTGATGTGAACGAGGAAAGCTTTTGGTATGGAAGAAGAATCGGATCAAAGAAGATGGGATTGGAAAAGAGGACGCCTCTCATGGTTGCTTCTTTATTTGGAAGCACCGAGGTGCTGAAGTATATTATTGAAACTGGCAGAGTTGATGTGAACCGGGCCTGTGGTTCTGATAAGGTCACAGCTCTTCATTGCGCTGTTGCTGGTGGCTCTGAATCCTCGCTGCAGATTGTTAAGCTCTTGCTTGACGCAAAGGCAGATCCTGACTGCCTTGATGCTAGCGGAAATAAGCCTGTTAATTTGATTGCTCCTGCCTTTAGTCCTTCATCCAACTCACGAAGGAAGGCGATGGAGTCCTTGCTGAGAGGCGATGGATTACTTCAAATTATTGAACAGGAGGCTGAGCCACAGAAATCTACAGCTCTGTCTTTATTATCGAAAGAAGCAGCAGAGAAGAAAGAATATCCTGTTGATATATCTTTGCCTGACATAAACAATGGTATATATGGAACGGATGAGTTCAGGATGTACAGTTTCAAGGTGAAGCCGTGTTCAAGGGCATACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCTGGGGAGAATGCAAGGAGGAGGGACCCACGAAAGTATCCTTACAGCTGCGTTCCTTGCCCAGAGTTCCGCAAAGGAAGCTGCCCCAAGGGGGATGCCTGTGAGTATGCTCATGGTGTTTTTGAATCATGGCTCCATCCTGCTCAATACCGAACGAGGCTTTGCAAGGATGAGACTGGATGCTCACGGAAAGTTTGCTTCTTTGCTCACAAACCTGAGGAGTTACGCCCTGTTTATGTTTCCACTGGGTCAGCAATGCCTTCACCAAAATCCTTTTCGGCTAGTGCACTTGACACAACTGTTATGAGCCCATTAGCTCTTAGCTCCTCTTCTTTGCCAATGTCAACTGTTTCGACACCACCCCTGTCTCCTTTGGCTGCTTCGTCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACCCCGCCATCCTTGCAGCTGCCAGGCAGCCGGCTGAAGGCTGCCTTAAGTGCTAGGGATCTTGATTTGGAAATGGAACTGCTTGGGCTAGAAAGTCAGGCTAACCAGCAGCAGCAACAGTTGATAGAAGAGATAGCTCGACTCTCTTCCCCATCTTTCCGGAGCAAAGAATACAGTAGGATAGGTGATTTGAAGCCAACTAACCTTGATGACCTTCTGGGATCTGTTGATCCTTCTGTTCTTTCTCAAATTCATGGACTATCAGCACAACCTTCAATGCCTACTCAACTGCAATCTCCAAATGGGCTTCAGATGCACCAAAACATGAACCACCTTCGTGCAAGCTATCCCACCAACCTTCCTTCCTCACCGGCAAGGAATTCCTTGGGTTTAGGGTTTGACTCATCGTCAGCTGTGGCAGCAGCAGTGATGAACTCCAGATCTGCAGCCTTCGCAAAGCGAAGTCAAAGTTTTATTGATCGTGGAGCGATATCGCCCCTCCATTTTGGCCAATCTGCAGCTTCCAACACCGCTTGCAGGGTTTCCTCTACACTTTCAGATTGGAGATCCCCTGATGGGAAATTGGATTGGGGCATGAATGGAGACGAGCTGAACAAACTGAAGAAATCTGCTTCTTTTGGGTTCAGAAACAATGGAAACACTAACACAACCTCGGCACGGTCTGAAAATTTTGAGCCGGACGTGTCGTGGGTCAATTCGCTAGTTAAAGATGTCCCCCCTGAGAAGCAGCAGCAATTTGATCCCAGTAGAGAGAGGCTTTCGCCGTGGGTGGAGCAGCTGTATAGAGAACACGAGCAGATTGTTGCATAA 2007 0.4738 MCGGSKTKLSPSTNDMEIRKQNRDVLCNISSLLELSATDDLKTFRREVEEKGSDVNEESFWYGRRIGSKKMGLEKRTPLMVASLFGSTEVLKYIIETGRVDVNRACGSDKVTALHCAVAGGSESSLQIVKLLLDAKADPDCLDASGNKPVNLIAPAFSPSSNSRRKAMESLLRGDGLLQIIEQEAEPQKSTALSLLSKEAAEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCPKGDACEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYVSTGSAMPSPKSFSASALDTTVMSPLALSSSSLPMSTVSTPPLSPLAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLDLEMELLGLESQANQQQQQLIEEIARLSSPSFRSKEYSRIGDLKPTNLDDLLGSVDPSVLSQIHGLSAQPSMPTQLQSPNGLQMHQNMNHLRASYPTNLPSSPARNSLGLGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRGAISPLHFGQSAASNTACRVSSTLSDWRSPDGKLDWGMNGDELNKLKKSASFGFRNNGNTNTTSARSENFEPDVSWVNSLVKDVPPEKQQQFDPSRERLSPWVEQLYREHEQIVA 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1819 668 Gene3D - 6 204 IPR036770 -
Prci2g1819 668 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 289 IPR000571 GO:0046872
Prci2g1819 668 PANTHER UNKEMPT FAMILY MEMBER 34 637 IPR045234 -
Prci2g1819 668 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Prci2g1819 668 SMART ANK_2a 109 141 IPR002110 GO:0005515
Prci2g1819 668 SMART ANK_2a 74 104 IPR002110 GO:0005515
Prci2g1819 668 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Prci2g1819 668 MobiDBLite consensus disorder prediction 360 380 - -
Prci2g1819 668 FunFam Zinc finger CCCH domain-containing protein 66 222 290 - -
Prci2g1819 668 Pfam Ankyrin repeats (3 copies) 69 141 IPR002110 GO:0005515
Prci2g1819 668 Gene3D - 265 327 - -
Prci2g1819 668 SUPERFAMILY Ankyrin repeat 39 151 IPR036770 -
Prci2g1819 668 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Prci2g1819 668 SMART c3hfinal6 299 322 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1819 Prci-Chr2 13371122 13374303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1819 29 636 C2H2 Transcription Factor Family AT5G12850 41.679 2.36e-141 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci2g1819 Ank_4 5e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1819 - - gmx:100783376 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1819 2 13371122 13374303 Prci2g1819 2 13371122 13374303 ECH