Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1810 ATGATTATTTGTATTGTGAGAATGGAAAATTTCTACTATTCTAGTTCTGGTTCTAGCTGGTGGCCTGTGCAGGGCACAAACAGTAATGGTCCTTCTCCCTATTCAGTTCAGACTCCAGTGTTGCCTCATCACATCTCTGAATCATGCTCTGTTCAGTTCTGTGAGTTCCCTCATTCATGGCCTGCAGAAGATAAAGCTGCCACTGCGTCCAAGAGCCATAGCCAAGCTGAGAAACGTCGTAGGGACAGGATCAATGCACAGCTTGCCACTCTCAGAAAACTCATCCCCAAGTCTGATAAGATGGACAAGGCAGCATTACTGGGGAGTGTGATAGAGCATGTGAAGGATCTGAAACGAAAAGCCATGGATATAGGCACATCCTTCACAGTCCCTACAGAGATAGACGAAGTATCAATAGACCAAGACGAAAGCCCAAGCTCCATCAACAACAAAGCGAATTACAAAGTGAAGGGAAACAATAACATAGTGATAAAAGCTTCAGTGTGCTGCGAGGATCGACCAGAACTGTTCTCAGAACTCATCAAAGTGTTGAAAGGGCTGAGGCTGACGGCTGTGAAGGCAGACATAGCCAGCGTGGGAGGTAGAATCAAAAGCATATTGGTGCTGTGTTCTAAGGACAGTGATGAAAGTGTTTGCGTGGCCACTCTGAAGCAGTCTCTTAAATCTGCTGTCACTAAAATTGCTGCTTCATCCTCATCAATGTCCGCTGCTTGTCCTGCAAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTCCACCTTGCCTCCACTGA 789 0.4626 MIICIVRMENFYYSSSGSSWWPVQGTNSNGPSPYSVQTPVLPHHISESCSVQFCEFPHSWPAEDKAATASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIEHVKDLKRKAMDIGTSFTVPTEIDEVSIDQDESPSSINNKANYKVKGNNNIVIKASVCCEDRPELFSELIKVLKGLRLTAVKADIASVGGRIKSILVLCSKDSDESVCVATLKQSLKSAVTKIAASSSSMSAACPARSKRQRFFLPPPCLH 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1810 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Prci2g1810 262 PANTHER TRANSCRIPTION FACTOR BHLH30 60 255 IPR045847 GO:0003700|GO:0006355
Prci2g1810 262 SMART finulus 74 123 IPR011598 GO:0046983
Prci2g1810 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 120 IPR036638 GO:0046983
Prci2g1810 262 Pfam Helix-loop-helix DNA-binding domain 71 117 IPR011598 GO:0046983
Prci2g1810 262 Gene3D - 62 124 IPR036638 GO:0046983
Prci2g1810 262 CDD bHLH_AtAIG1_like 63 142 - -
Prci2g1810 262 CDD ACT_UUR-ACR-like 167 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1810 Prci-Chr2 13274202 13275759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1810 8 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.435 2.17e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci2g1810 HLH 9.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1810 - - gmx:100799687 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1810 2 13274202 13275759 Prci2g1810 2 13274202 13275759 CCT
Prci2g1810 2 13274202 13275759 Prci2g1810 2 13274202 13275759 ECH