Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1794 ATGAAGGAGATGGAGAGGCTGGCGGAGGTAACCGAATCAGAGATTCGAATAGACTTCTCTCTCAACTGCAAATGCCGAGCCACCGTGAGTCTCCGATCTCTATGTGCTGCCTCGCCACTGGCCTTCAAGGTCCAGACCTCCTCCCCCAACAAGTTCCTCGTTAATCCCCCCGCCGGACTCATCGCTCCTCTCTCTTACGCCACCTTCCAAGTCATCCTCAAGCCTCAGTCCCAACTTCCCCCAACGTTCCCCCGCTCTCCCTCCGATCGCTTCCTCATCAAGCTCGCTCAATTCCCTCCCAACTCCTCCAATCCCGTTCCCTCTCACTCCATTAATTCATGGTTCTCCTCTCTCCCATCCTCCGCTTCCACTCATAATCTCAAACTCAAGGTTGCCTTCGTCGGCCCCCTCCTTCTCCGCCATTCTGTCGCGCGTGGCGATTCAGATGCCGTCAGGAACCTCATCAAACGGCAGAGGTCTCTACTCGCCGATTTGTCGCCCAATGAAGCCGAGTCGCTCCTCCGAGTCGCCACCGGGTTGGCTAACCCGGACGGCATGGTTCACTTGCTGTTGGAAGCCGGGTTGAGGGTGGAGGAGGCACTGGGATCTGGTAACGTGGACCAGAGATGGGCTTCGAAGGGCTGGGATGAGTTACACGTGGCGGCAGCTTTTGATCTGGCGGATGACATCCTGAGGTTGTTAAAGACGAATCCGTCGTGGCCGTTGGATTCCAGAGATCACAAGGGTAGGACCCCTTTGCATTTGGCGGCAGATAAGGGAAATATCAAGTGCGCGCGCGTGCTGGTGGAGGGCGGTGCCAATGTGAATGGCAGGTGTAACGACGGTCGTACGCCGTTATACAGAGCGGCGGCGAATGGTGACCGGAGGATGGTGGAAATGCTGGTTGAGATGGGCGCCGACCCAACTATAGCCGACGATCGTGGCCGTTCGGCCCTTTCCATTGCTAGTGACGAAGGACACAAAGAGGTGGTGGAAATAATGGAGCAAGGAGAAGAAGTACTGGACGCAGCGAGGCATGGAGACGTGAAGAAACTGGAGTCACTGTTGAAGAGAGGAGCGAATGTAGAGTACCGTGATCAGTATGGTTTGACAGCACTTCATGCGGCAGCCATGAAAGGGCACAGAGAGATGGTATGGATGCTGACAGAAGCAGGACTGGACTTGGAATGTGAGGACGAGGAAGGTCACGCGCCGCTGCATATGGCGGTGGGGAGCGGTGACCAAGAGACCATACGAGTGTTACTGAACAAGGGAGTGAATGTAAATGCTACTAACAAGAAGGGCGCCACCCCTTTGTACATGGCTAGAATTTTGGGATACGATGCCATTGCTGACTTCCTTGTCACCAGAGGAGCAATGTCCTGTTTTCCTGTGATTTTATCCTAA 1407 0.5494 MKEMERLAEVTESEIRIDFSLNCKCRATVSLRSLCAASPLAFKVQTSSPNKFLVNPPAGLIAPLSYATFQVILKPQSQLPPTFPRSPSDRFLIKLAQFPPNSSNPVPSHSINSWFSSLPSSASTHNLKLKVAFVGPLLLRHSVARGDSDAVRNLIKRQRSLLADLSPNEAESLLRVATGLANPDGMVHLLLEAGLRVEEALGSGNVDQRWASKGWDELHVAAAFDLADDILRLLKTNPSWPLDSRDHKGRTPLHLAADKGNIKCARVLVEGGANVNGRCNDGRTPLYRAAANGDRRMVEMLVEMGADPTIADDRGRSALSIASDEGHKEVVEIMEQGEEVLDAARHGDVKKLESLLKRGANVEYRDQYGLTALHAAAMKGHREMVWMLTEAGLDLECEDEEGHAPLHMAVGSGDQETIRVLLNKGVNVNATNKKGATPLYMARILGYDAIADFLVTRGAMSCFPVILS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1794 468 ProSiteProfiles Ankyrin repeat region circular profile. 248 276 - -
Prci2g1794 468 ProSiteProfiles Ankyrin repeat region circular profile. 401 433 - -
Prci2g1794 468 PRINTS Ankyrin repeat signature 249 264 IPR002110 GO:0005515
Prci2g1794 468 PRINTS Ankyrin repeat signature 417 431 IPR002110 GO:0005515
Prci2g1794 468 SMART ANK_2a 281 310 IPR002110 GO:0005515
Prci2g1794 468 SMART ANK_2a 401 430 IPR002110 GO:0005515
Prci2g1794 468 SMART ANK_2a 314 343 IPR002110 GO:0005515
Prci2g1794 468 SMART ANK_2a 248 277 IPR002110 GO:0005515
Prci2g1794 468 SMART ANK_2a 368 397 IPR002110 GO:0005515
Prci2g1794 468 SMART ANK_2a 213 243 IPR002110 GO:0005515
Prci2g1794 468 SMART ANK_2a 134 163 IPR002110 GO:0005515
Prci2g1794 468 SMART ANK_2a 434 464 IPR002110 GO:0005515
Prci2g1794 468 Gene3D - 339 462 IPR036770 -
Prci2g1794 468 Gene3D Immunoglobulins 2 136 IPR013783 -
Prci2g1794 468 Pfam Ankyrin repeats (many copies) 249 302 IPR002110 GO:0005515
Prci2g1794 468 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 132 IPR000535 -
Prci2g1794 468 SUPERFAMILY PapD-like 13 141 IPR008962 -
Prci2g1794 468 ProSiteProfiles Ankyrin repeat region circular profile. 281 313 - -
Prci2g1794 468 Pfam MSP (Major sperm protein) domain 38 105 IPR000535 -
Prci2g1794 468 ProSiteProfiles Ankyrin repeat region circular profile. 368 400 - -
Prci2g1794 468 ProSiteProfiles Ankyrin repeat profile. 248 280 IPR002110 GO:0005515
Prci2g1794 468 PANTHER MYOTROPHIN 343 460 - -
Prci2g1794 468 Pfam Ankyrin repeats (3 copies) 343 432 IPR002110 GO:0005515
Prci2g1794 468 Gene3D - 137 338 IPR036770 -
Prci2g1794 468 ProSiteProfiles Ankyrin repeat profile. 401 433 IPR002110 GO:0005515
Prci2g1794 468 SUPERFAMILY Ankyrin repeat 144 459 IPR036770 -
Prci2g1794 468 ProSiteProfiles Ankyrin repeat profile. 281 313 IPR002110 GO:0005515
Prci2g1794 468 ProSiteProfiles Ankyrin repeat profile. 368 400 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1794 Prci-Chr2 13185050 13186933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1794 289 459 Ion Channels AT2G25600 28.070 2.83e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1794 - - pcin:129303436 917.916