Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1789 ATGGACTCTCATTCCCCCAACAAAGCCTTAACGAGAACGCGATTTTCTGAGCTGAACCCGCCACTTTCTAAACCGGTCCTTGAAGCCCTGTCGAAGTCTGGCTTCGAGTTCTGCACGCCGGTTCAAGCTGCCACAATACCTTTGCTATGCAGTTTTAAGGATGTGGCTGTCGACGCTGCCACCGGCTCAGGCAAGACACTGGCATTTGTCGTTCCACTTGTTGAGATTCTCCGCCGGTCCTGTTCCAAACCCAAACTTCATCAGGTATTTGGAATAATTATATCTCCCACCAGGGAGCTGTCATCCCAAATATACCATGTTGCACAACCTTTCATTAAAACTTTAGCTAATGTTAAGTCCATGCTCCTTGTTGGTGGAGTAGACGTAAAGGCAGATATGAAAATTGAGGAAGAGGGAGCTAATATATTGATTGGCACACCTGGGCGGCTATATGACATAATGGATCGAATGGATATATTGGATTTTAAAAGCCTCGAGATTTTAATTTTAGACGAGGCTGATAGACTCCTGGATATGGGATTCCAGAAGCAGATTAATTCCGTTATATCTCTCTTACCAAAGCTTCGCAGAACAGGTCTATTCTCTGCTACTCAAACTGAGGCTGTTGAGGAGCTTTCTAAAGCCGGGCTGAGAAATCCTGTGAGGGTTGAAGTTCAGGCAGAGTCAAAATCAGTAAATGACCCTGCAGCATCACAACAGCCAGTCTCTTCAAGGACGCCAGCAGGACTTCAAATTGAGTACATGGAATGTGAGGCTGAAAAGAAACCATCACAACTTGTTGATATCTTAATGAAGAACCGCTCCAAGAAAATGATAATATACTTCATGACCTGTGCCTGTGTTGACTATTGGGGACTTGTCCTTCCTCGCCTTCCTGCCCTGAAAGGTTTCTCCTTAATCCCTCTTCATGGAAAGATGAAGCAGGCTGCTAGGGAGAAGGCATTGGCGTCATTTACATCTCTTTCAAATGGGATACTTCTATGCACAGATGTTGCAGCACGTGGACTTGACATACCTGGAGTTGATTGTATAGTGCAGTATGATCCGCCGCAAGACCCTAATGTTTTCATACATAGAGTTGGGAGAACTGCTCGGCTGGGTAAACAAGGACATGCTATTGTCTTCTTATTGCCAAAGGAAGAATCTTATGTGGAATTCCTTCGTGTAAGAAGAGTCCCCCTCCAAGAGAGAAGTTCCTCTAATGATGCATCTGATGTTGTTCCTGAGCTTCGTTCTGCTGCCAAAAAGGATCGTGATGTAATGGAGAAAGGACTTAGGGCATTTGTTTCTTATATACGTGCTTATAAAGAGCATCACTGCTCCTATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAGTTGGCCATGGGATATGGCTTACTGCAGCTTCCTTCAATGTCAGAGTTAAAACAGCAGTCACTTTCCACGGAAGGTTTTGTACCAGTTGAAGACATTAATTTGGAGGACATTAAGTACAGGGATAAATCTCGTGAAAAACAAAGGAGGCAAAACTTGCAAGCTAAGAAAGAAGCCAAAGACAAAGAGGCAAAGCCTCAGAAACCCACCAAAACCGCCAAAGCGGCCCCTGTAACAAGGAAGAAAACAGCTAAACAGAGACGTGCTCAGCAGTCAGTTGAAGATGATGATGAGCTTATGCGAGAATATCGGCTGTGGAAAAAATTGAAGAAAGGAGCTATAGATGAGAATGAGTATGACAAGTTAACGGGCACTGAAGAATTAATTTGA 1767 0.438 MDSHSPNKALTRTRFSELNPPLSKPVLEALSKSGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCSKPKLHQVFGIIISPTRELSSQIYHVAQPFIKTLANVKSMLLVGGVDVKADMKXIEEEGANILIGTPGRLYDIMDRMDILDFKSLEILILDEADRLLDMGFQKQINSVISLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVQAESKSVNDPAASQQPVSSRTPAGLQIEYMECEAEKKPSQLVDILMKNRSKKMIIYFMTCACVDYWGLVLPRLPALKGFSLIPLHGKMKQAAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAIVFLLPKEESYVEFLRVRRVPLQERSSSNDASDVVPELRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMSELKQQSLSTEGFVPVEDINLEDIKYRDKSREKQRRQNLQAKKEAKDKEAKPQKPTKTAKAAPVTRKKTAKQRRAQQSVEDDDELMREYRLWKKLKKGAIDENEYDKLTGTEELI 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1789 589 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Prci2g1789 589 Gene3D - 252 487 IPR027417 -
Prci2g1789 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Prci2g1789 589 CDD DEADc_DDX55 26 224 - -
Prci2g1789 589 PANTHER RNA HELICASE 11 517 - -
Prci2g1789 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Prci2g1789 589 CDD SF2_C_DEAD 251 384 - -
Prci2g1789 589 SMART DUF4217_3 413 476 IPR025313 -
Prci2g1789 589 Gene3D - 2 227 IPR027417 -
Prci2g1789 589 FunFam RNA helicase 9 227 - -
Prci2g1789 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Prci2g1789 589 MobiDBLite consensus disorder prediction 501 529 - -
Prci2g1789 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Prci2g1789 589 MobiDBLite consensus disorder prediction 501 556 - -
Prci2g1789 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Prci2g1789 589 SMART ultradead3 34 234 IPR014001 -
Prci2g1789 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Prci2g1789 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 395 IPR027417 -
Prci2g1789 589 Coils Coil 503 525 - -
Prci2g1789 589 SMART helicmild6 290 375 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1789 Prci-Chr2 13156399 13160721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1789 17 389 Eukaryotic Initiation Factors Gene Family AT1G72730 29.947 8.79e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1789 K14809 - gmx:100801482 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1789 2 13156399 13160721 Prci2g1789 2 13156399 13160721 ECH