Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1786 ATGTCGCACAAAAAGAGGAATTTATATCAATCAAAGCGTTCATTGAAATCTCACCCCTTTGAGGCATTTCTCTCTGGCTCATGGAAAGCTGTGGAGCTCATAAAAATTGAGGGGGGAACTTCAACACTGCATTTTATCAATAGCCAAAATAGAGTTTTGAAGAAAGGTCCTGATTCAGACATTCGGATAAGGTCAAGGAAAGCTACTCTATCAGATTGCTCCTGTTTTCTAAGACCTGGAATTGATGTATGTGTGCTATCAGCCTCTCAACAGGATGATAATTCAGGGAAAATTTGTCTTGAACCTGGGTGGGTTGATGCTAGAATAAGATCTGTGCAGAGAAAGCCCCACGAATCTAGGTGTTCATGTGAATATTTTGTCAACCTCTATGTTAATCAAGGTTGTTATGATCTAGAGATGAGAAGTCTTAATAAGGAGAGTAAAGTGGTTGGAATAAATCAAATATCCATCCTCCAGAAGCTTGATCGCAATCCCTGTGGAGATCAGCATTATCGGTGGGAATCATCTGAGGATTGCTTTGAAGCACGAAAGACTAAATTGTTTGCAGGAAAATTCTTATCTGATTTTGCATGGTTGGTTGTTGCATCAGCTTTAAAGCAGGTAAATTTCAGAGTAGACAATGGGATGTTAGTACCCATTGTTGCTCATATCGTTCTGTCTGACGACAAAAAGATAGACCAAGCAAAAGATGCATCTGAAGATGAGATCTCACCAGTTTCTTGCACAGAGGGCTTACGGCGTTCCAAACGTCGTAACATAGAACCTGAACGTTACCTTGGTTGTGATGGTGTCTTTAAGTTGGATTTTGGTTCTGTTCGAACCAGTTTACCCAAGTCCAACACAAGTAAAGATGGCGTTGATTTACAAGCAAATTGTCTAGAAGAAGATATAGATGCTTGTCAAAATATCAATAAGATAAATACCTGCCAGGAGGTCCTAGTGAACAAAAGTGGGGCTGCAAGTGGGAAGGTGAAGTTAGATGATGTTGACAAAGAAGGGCATAAGACTCAACCTGTTAGTGATTCTCTGCCTGATGGAGGTGGTCCAGTAGCACATGACCATTCTTATCTCAACACAAACAATACTGGAAATTCTAGGCATGAAAATTGTGTTTTTTCCAAATATAATCATCTGACTCATTGCCCTAAACTGAACAGGAAAATTGTTGACCCATGGACATTTGAACCGTATGATCATCTACCAAAAGTTCCTGATCCTGAAAATTCTGCAAAAGAAATTGATGATAAATCTTCTCTATGTTATTCTGATACCCGTAACGTGCAGAGGAAGGATTTATATGGTCCGGAGGACATGGACACTGAAAATAGATGGGAAGGGATGCACTCCAATAAAGAAATTCAAGGAAAAAATTATCATTCACCAATGAGAAGTAAAAGTTGTGGGGAAGAAAGAACTTACAAAGACAGATCCTTAAGTGATGCTGAAAATTGTGCAAAAGAGATTGATGATAAATCTCCTAAATGTTATTTTGGTACCTGTAACGTGCAGATGAAGGATTTATCTGGTCTGGTGGACGTGGATACTGAAAATAGAAGTGAAGGGATACATTCCGATAAAGAAATTCAACGGGAAAAATATCAGCCACCAACAACAAGAAGTAAAAGTCGTGGGGAAGAAAGAACTTGCAAAGACAGATCCTCAAGTGATGCTGAAAATTGTGCAAAAGAGATTGATGATAAATCTTCTGGATGTTATTATTTTGGTGCCTGTAATGTGCAGAGGAAGAATTTATCTTGTCTGGAGGACATGGATACTGAAAATAGATGTGAAGGGACACATTCTGATAAAGAAATTCAAGAGGAAAAATATCAGCCACCAACAACAAGAAGTAAAAGTCATGGGGGAGAAAGAACTTACAAAGGCAGATCCGCAAGTCATGCTGAAAATTCTGCGAAAGAGATTGTTGATAAATCTTCTAGATGTTATTACTTCAGTGCCAGTAATTTGCAGAGGAAGGATTTATCTGGTCGGGGGTACATGGATTCTGAAAATAGATGGGAAAGACATTCTGAAGAAATTCAAGGGGAAAAATATCAGCCACCAACAACAAGAAGTCAAAGTCGTGGGGGAGAAAGAACTTACAAAGACAGATCCTCAAGTCATGCTGAAAATTCTGCCAAAGGTATTGGTGATAAATCTTCCAGTTGTTATTACTTTAGTGCCAGTAATTTGCAGAGGAAGAATTTGTCGAGTGGGGAGGACATGGATGCTGAAAATAGATGGGAAGGGATACAAGAAAGAACTTGCAAAGCCAGATCCTTAAGTGATGCTGAAAATTGTGCAAAAGAGGTTGGTGATAAATCTTCTAGATGTTACTATTTTGGCACCTGTAATGTGCACAGGAAGGATTTATCTGGTCTGGAGGACATGGATACAGAAAATAGACCGGACAGGATACGTTCCAATAAAGAAATTCAAGAGAAAAAATATTATTTACCAATGACAAGGAGTAAAAGTTTTACTCACAGTGAAGAAAGAACTTACAAAGACAGATCTTTAAGTGATGCTGCCTACAAGGAATTGATAGATTTTTACTTAAAGAATACTGACATGGCACCAACTAAAGAGGAGCCACCTATACCTGACCAGTGGGTAGAATTTAAGGCAACAAGCAACTATGGACAAAAGTGGGGGGCAAAACCTGATGGAGAAGTTTCTGAAATTGATTTATTGTGGAGAGAAATGGAAGTTGCATTAGCATCAAATTACATCTTTGATAACATAGAGGATTCAAAGGCTGCAGTCTTTTCTGAAACTGAGGAAAATTCTGACAAACTTTGTCATCACGATTTTAGATTGAATGAAGAGATTGGAATTTACTGCTGTAAATGTGGCTATGTGAGCACAGAGATAAAAGACATTTCGCCACCCTTTGTGCAAAACTTGGGATGGCAACAAGATGAAAAGCAGTGGAATGCTGCAAAGGCCAACGAGGATGATAGTTTACATCTTTTCTCAAATCATCCTTCAACTGATATGCCTGTATCTGAAGAAAATGATATCTGGGGACTGATTCCCGAACTTACTAGTAAGTTACATGTCCACCAGAAAAAAGCTTTTGAATTTCTTTGGAAAAACATTTCTGGATATGTGGAACCAGCATCTGTGAAAGCAGCATCAAAAAGAATAGGTGGCTGCGTGATATCTCATTCACCTGGAGCTGGGAAAACTTTTCTAATTATTGCATTTCTTGCAAGCTACTTGAAGTTGTTCCCAGGAGAGAAACCTTTGGTCCTTGCTCCAAAGACAACACTTTATACGTGGTATAAAGAATTTATCAAATGGGAAATTCCTTTACCAGTGTACCTAATTCAATCTCAACGTAGAGCCCATGGAGCATGCAAGGAGTCATTGGTTATTCCTGGTGTGCCAAAGCCCAATGGAGATGTCAGGCATCTTTTGGACTCTCTTGAAAAAATACAGAAGTGGCATTCACACCCGAGTGTTCTAGTCATGAGTTATACTTACTTTTCTAGGCTGATGGGAGAGAATTCAAAGTTTTCGCACCGAAAGTATATGGCTGAAGTTTTGAGGAAAAGTCCAGGGGTCCTGATTCTGGATGAAGGGCACAATCCTAGAAGTACAGAATCACGTTTGAGGAAAGCCTTAATGAAAGTAGAGACAGAATTGAGAATACTACTTTCAGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTCTTCTTGGCAAGACCAAAGTTTGTTCATGAAGTGCTGAGAGAATTAGACCCCAAATATAAGAGGAAAAAAGGGAGAGCTGAAAGAAAACCGAACTTCATAGAAGCACGGGCAAGAAAATTATTCTTAGATAAAATTGCAAAAAAAATAGACTCTGGTGATAGTGATGAGAGGTTGCAGGGTTTAAACATGTTAAGAAAGATCACAAATGGATTTATAGATGTTTATGAAGGTGGAGGTTCTGATAGTCTTCCTGGTTTGCATGTTTATACATTGTTAATGAATATTACTGATTATCAAGATCAGCTTTTTCATGCACTCTATGAAAAAATTGCCGATTCCAATCGGTATCCCCTGGAGGTGGAGCTTTTGGTAACCCTTGGAGCAATACATCCGTGGCTAATTAAAACAGCTGCATGCTCTGATAAGTTTTTAAATGAGGCGCAACTGAGGGAGCTAGAAAAATGCAAGTTTGATTTGAAGATAGGACCAAAAATACGGTTTGTTCTGGGCCTTGTATATCGTGTTGTCAAGGAGGAAAAGACTCTTGTCTTTTTCCACTACATTGCACCTATGAGATTGTTTGTAGAACTATTCGAGAAATTCTTTGGATGGCAGTTAGGTTGCGAAGTTTTGGTACTTAGTGGGGAACAAGATCTCTTTGAACGTGGAAGAGTCATGGATAAGTTTGAGGAGCCTAGAGGAGCATCAAAGGTACTCCTTGCTTCAATTACAGCCTGTTCTGAAGGCATTAGTCTGACAGCAGCTTCTCGTGTGATTTTGTTGGACTCAGAGTGGAATCCATCAAGAACAAGGCAAGCTATTGCCCGTGCCTTTCGTCCTGGTCAGCAAAGGATTGTATATGTGTATCGGCTTTTGGTGACGGGTACAATGGAGGAAGAAAAATATCGCAAAACCACCTGGAAAGAGTGGGTTTCAAGAATGATTTTTAGTGAGGATTTTGTGGAGGATCAATCAAAATGGCAAGCAGAAAAGCTTGAAGATGATATACTTCAGGAAATGATTGCCGAAGACAAGTCTAAAATATTCCATGTGATAATGAAAGATGAGAAAGCTTCAACCAACTGA 4818 0.3908 MSHKKRNLYQSKRSLKSHPFEAFLSGSWKAVELIKIEGGTSTLHFINSQNRVLKKGPDSDIRIRSRKATLSDCSCFLRPGIDVCVLSASQQDDNSGKICLEPGWVDARIRSVQRKPHESRCSCEYFVNLYVNQGCYDLEMRSLNKESKVVGINQISILQKLDRNPCGDQHYRWESSEDCFEARKTKLFAGKFLSDFAWLVVASALKQVNFRVDNGMLVPIVAHIVLSDDKKIDQAKDASEDEISPVSCTEGLRRSKRRNIEPERYLGCDGVFKLDFGSVRTSLPKSNTSKDGVDLQANCLEEDIDACQNINKINTCQEVLVNKSGAASGKVKLDDVDKEGHKTQPVSDSLPDGGGPVAHDHSYLNTNNTGNSRHENCVFSKYNHLTHCPKLNRKIVDPWTFEPYDHLPKVPDPENSAKEIDDKSSLCYSDTRNVQRKDLYGPEDMDTENRWEGMHSNKEIQGKNYHSPMRSKSCGEERTYKDRSLSDAENCAKEIDDKSPKCYFGTCNVQMKDLSGLVDVDTENRSEGIHSDKEIQREKYQPPTTRSKSRGEERTCKDRSSSDAENCAKEIDDKSSGCYYFGACNVQRKNLSCLEDMDTENRCEGTHSDKEIQEEKYQPPTTRSKSHGGERTYKGRSASHAENSAKEIVDKSSRCYYFSASNLQRKDLSGRGYMDSENRWERHSEEIQGEKYQPPTTRSQSRGGERTYKDRSSSHAENSAKGIGDKSSSCYYFSASNLQRKNLSSGEDMDAENRWEGIQERTCKARSLSDAENCAKEVGDKSSRCYYFGTCNVHRKDLSGLEDMDTENRPDRIRSNKEIQEKKYYLPMTRSKSFTHSEERTYKDRSLSDAAYKELIDFYLKNTDMAPTKEEPPIPDQWVEFKATSNYGQKWGAKPDGEVSEIDLLWREMEVALASNYIFDNIEDSKAAVFSETEENSDKLCHHDFRLNEEIGIYCCKCGYVSTEIKDISPPFVQNLGWQQDEKQWNAAKANEDDSLHLFSNHPSTDMPVSEENDIWGLIPELTSKLHVHQKKAFEFLWKNISGYVEPASVKAASKRIGGCVISHSPGAGKTFLIIAFLASYLKLFPGEKPLVLAPKTTLYTWYKEFIKWEIPLPVYLIQSQRRAHGACKESLVIPGVPKPNGDVRHLLDSLEKIQKWHSHPSVLVMSYTYFSRLMGENSKFSHRKYMAEVLRKSPGVLILDEGHNPRSTESRLRKALMKVETELRILLSGTLFQNNFCEYFNTLFLARPKFVHEVLRELDPKYKRKKGRAERKPNFIEARARKLFLDKIAKKIDSGDSDERLQGLNMLRKITNGFIDVYEGGGSDSLPGLHVYTLLMNITDYQDQLFHALYEKIADSNRYPLEVELLVTLGAIHPWLIKTAACSDKFLNEAQLRELEKCKFDLKIGPKIRFVLGLVYRVVKEEKTLVFFHYIAPMRLFVELFEKFFGWQLGCEVLVLSGEQDLFERGRVMDKFEEPRGASKVLLASITACSEGISLTAASRVILLDSEWNPSRTRQAIARAFRPGQQRIVYVYRLLVTGTMEEEKYRKTTWKEWVSRMIFSEDFVEDQSKWQAEKLEDDILQEMIAEDKSKIFHVIMKDEKASTN 1605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1786 1605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1051 1250 IPR014001 -
Prci2g1786 1605 MobiDBLite consensus disorder prediction 331 345 - -
Prci2g1786 1605 Pfam Helicase conserved C-terminal domain 1408 1524 IPR001650 -
Prci2g1786 1605 Gene3D - 999 1292 IPR038718 -
Prci2g1786 1605 SMART helicmild6 1440 1525 IPR001650 -
Prci2g1786 1605 SMART ultradead3 1022 1258 IPR014001 -
Prci2g1786 1605 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 493 1604 IPR044567 GO:0080188
Prci2g1786 1605 MobiDBLite consensus disorder prediction 524 559 - -
Prci2g1786 1605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1325 1590 IPR027417 -
Prci2g1786 1605 MobiDBLite consensus disorder prediction 601 646 - -
Prci2g1786 1605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1253 IPR027417 -
Prci2g1786 1605 CDD SF2_C_SNF 1400 1536 - -
Prci2g1786 1605 Pfam SNF2-related domain 1029 1349 IPR000330 GO:0005524|GO:0140658
Prci2g1786 1605 Gene3D - 1328 1605 IPR027417 -
Prci2g1786 1605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1412 1572 IPR001650 -
Prci2g1786 1605 MobiDBLite consensus disorder prediction 331 370 - -
Prci2g1786 1605 MobiDBLite consensus disorder prediction 679 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1786 Prci-Chr2 13115329 13122265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1786 1423 1543 RAD5 or RAD16-like Gene Family AT5G43530 38.017 1.04e-12 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci2g1786 SNF2_N 1.7e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1786 K10875 - qsa:O6P43_013801 1113.98