Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1785 ATGTCGCACAAAAAGAGGAATTTATATCAATCAAAGCGTTCATTGAAATCTCACCCCTTTGAGGCATTTCTCTCTGGCTCATGGAAAGCTGTGGAGCTCATAAAAATTGAGGGGGGAACTTCAACACTGCATTTTATCAATAGCCAAAATAGAGTTTTGAAGAAAGGTCCTGATTCAGACATTCGGATAAGGTCAAGGAAAGCTACTCTATCAGATTGCTCCTGTTTTCTAAGACCTGGAATTGATGTATGTGTGCTATCAGCCTCTCAACAGGATGATAATTCAGGGAAAATTTGTCTTGAACCTGGGTGGGTTGATGCTAGAATAAGATCTGTGCAGAGAAAGCCCCACGAATCTAGGTGTTCATGTGAATATTTTGTCAACCTCTATGTTAATCAAGGTTGTTATGATCTAGAGATGAGAAGTCTTAATAAGGAGAGTAAAGTGGTTGGAATAAATCAAATATCCATCCTCCAGAAGCTTGATCGCAATCCCTGTGGAGATCAGCATTATCGGTGGGAATCATCTGAGGATTGCTTTGAAGCACGAAAGACTAAATTGTTTGCAGGAAAATTCTTATCTGATTTTGCATGGTTGGTTGTTGCATCAGCTTTAAAGCAGGTCTCTTTCTGTGTAAGATCTGTAGAAAACAAGATTGTTTATCAAATTTTGGGATGTGAACGTTCAAGCTCTTCATTGAACTGTAATTCTCTTAAACAGGTAAATTTCAGAGTAGACAATGGGATGTTAGTACCCATTGTTGCTCATATCGTTCTGTCTGACGACAAAAAGATAGACCAAGCAAAAGATGCATCTGAAGATGAGATCTCACCAGTTTCTTGCACAGAGGGCTTACGGCGTTCCAAACGTCGTAACATAGAACCTGAACGTTACCTTGGTTGTGATGGTGTCTTTAAGTTGGATTTTGGTTCTGTTCGAACCAGTTTACCCAAGTCCAACACAAGTAAAGATGGCGTTGATTTACAAGCAAATTGTCTAGAAGAAGATATAGATGCTTGTCAAAATATCAATAAGATAAATACCTGCCAGGAGGTCCTAGTGAACAAAAGTGGGGCTGCAAGTGGGAAGGTGAAGTTAGATGATGTTGACAAAGAAGGGCATAAGACTCAACCTGTTAGTGATTCTCTGCCTGATGGAGGTGGTCCAGTAGCACATGACCATTCTTATCTCAACACAAACAATACTGGAAATTCTAGGCATGAAAATTGTGTTTTTTCCAAATATAATCATCTGACTCATTGCCCTAAACTGAACAGGAAAATTGTTGACCCATGGACATTTGAACCGTATGATCATCTACCAAAAGTTCCTGATCCTGAAAATTCTGCAAAAGAAATTGATGATAAATCTTCTCTATGTTATTCTGATACCCGTAACGTGCAGAGGAAGGATTTATATGGTCCGGAGGACATGGACACTGAAAATAGATGGGAAGGGATGCACTCCAATAAAGAAATTCAAGGAAAAAATTATCATTCACCAATGAGAAGTAAAAGTTGTGGGGAAGAAAGAACTTACAAAGACAGATCCTTAAGTGATGCTGAAAATTGTGCAAAAGAGATTGATGATAAATCTCCTAAATGTTATTTTGGTACCTGTAACGTGCAGATGAAGGATTTATCTGGTCTGGTGGACGTGGATACTGAAAATAGAAGTGAAGGGATACATTCCGATAAAGAAATTCAACGGGAAAAATATCAGCCACCAACAACAAGAAGTAAAAGTCGTGGGGAAGAAAGAACTTGCAAAGACAGATCCTCAAGTGATGCTGAAAATTGTGCAAAAGAGATTGATGATAAATCTTCTGGATGTTATTATTTTGGTGCCTGTAATGTGCAGAGGAAGAATTTATCTTGTCTGGAGGACATGGATACTGAAAATAGATGTGAAGGGACACATTCTGATAAAGAAATTCAAGAGGAAAAATATCAGCCACCAACAACAAGAAGTAAAAGTCATGGGGGAGAAAGAACTTACAAAGGCAGATCCGCAAGTCATGCTGAAAATTCTGCGAAAGAGATTGTTGATAAATCTTCTAGATGTTATTACTTCAGTGCCAGTAATTTGCAGAGGAAGGATTTATCTGGTCGGGGGTACATGGATTCTGAAAATAGATGGGAAAGACATTCTGAAGAAATTCAAGGGGAAAAATATCAGCCACCAACAACAAGAAGTCAAAGTCGTGGGGGAGAAAGAACTTACAAAGACAGATCCTCAAGTCATGCTGAAAATTCTGCCAAAGGTATTGGTGATAAATCTTCCAGTTGTTATTACTTTAGTGCCAGTAATTTGCAGAGGAAGAATTTGTCGAGTGGGGAGGACATGGATGCTGAAAATAGATGGGAAGGGATACAAGAAAGAACTTGCAAAGCCAGATCCTTAAGTGATGCTGAAAATTGTGCAAAAGAGGTTGGTGATAAATCTTCTAGATGTTACTATTTTGGCACCTGTAATGTGCACAGGAAGGATTTATCTGGTCTGGAGGACATGGATACAGAAAATAGACCGGACAGGATACGTTCCAATAAAGAAATTCAAGAGAAAAAATATTATTTACCAATGACAAGGAGTAAAAGTTTTACTCACAGTGAAGAAAGAACTTACAAAGACAGATCTTTAAGTGATGCTGCCTACAAGGAATTGATAGATTTTTACTTAAAGAATACTGACATGGCACCAACTAAAGAGGAGCCACCTATACCTGACCAGTGGGTAGAATTTAAGGCAACAAGCAACTATGGACAAAAGTGGGGGGCAAAACCTGATGGAGAAGTTTCTGAAATTGATTTATTGTGGAGAGAAATGGAAGTTGCATTAGCATCAAATTACATCTTTGATAACATAGAGGATTCAAAGGCTGCAGTCTTTTCTGAAACTGAGGAAAATTCTGACAAACTTTGTCATCACGATTTTAGATTGAATGAAGAGATTGGAATTTACTGCTGTAAATGTGGCTATGTGAGCACAGAGATAAAAGACATTTCGCCACCCTTTGTGCAAAACTTGGGATGGCAACAAGATGAAAAGCAGTGGAATGCTGCAAAGGCCAACGAGGATGATAGTTTACATCTTTTCTCAAATCATCCTTCAACTGATATGCCTGTATCTGAAGAAAATGATATCTGGGGACTGATTCCCGAACTTACTAGTAAGTTACATGTCCACCAGAAAAAAGCTTTTGAATTTCTTTGGAAAAACATTTCTGGATATGTGGAACCAGCATCTGTGAAAGCAGCATCAAAAAGAATAGGTGGCTGCGTGATATCTCATTCACCTGGAGCTGGGAAAACTTTTCTAATTATTGCATTTCTTGCAAGCTACTTGAAGTTGTTCCCAGGAGAGAAACCTTTGGTCCTTGCTCCAAAGACAACACTTTATACGTGGTATAAAGAATTTATCAAATGGGAAATTCCTTTACCAGTGTACCTAATTCAATCTCAACGTAGAGCCCATGGAGCATGCAAGGAGTCATTGGTTATTCCTGGTGTGCCAAAGCCCAATGGAGATGTCAGGCATCTTTTGGACTCTCTTGAAAAAATACAGAAGTGGCATTCACACCCGAGTGTTCTAGTCATGAGTTATACTTACTTTTCTAGGCTGATGGGAGAGAATTCAAAGTTTTCGCACCGAAAGTATATGGCTGAAGTTTTGAGGAAAAGTCCAGGGGTCCTGATTCTGGATGAAGGGCACAATCCTAGAAGTACAGAATCACGTTTGAGGAAAGCCTTAATGAAAGTAGAGACAGAATTGAGAATACTACTTTCAGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTCTTCTTGGCAAGACCAAAGTTTGTTCATGAAGTGCTGAGAGAATTAGACCCCAAATATAAGAGGAAAAAAGGGAGAGCTGAAAGAAAACCGAACTTCATAGAAGCACGGGCAAGAAAATTATTCTTAGATAAAATTGCAAAAAAAATAGACTCTGGTGATAGTGATGAGAGGTTGCAGGGTTTAAACATGTTAAGAAAGATCACAAATGGATTTATAGATGTTTATGAAGGTGGAGGTTCTGATAGTCTTCCTGGTTTGCATGTTTATACATTGTTAATGAATATTACTGATTATCAAGATCAGCTTTTTCATGCACTCTATGAAAAAATTGCCGATTCCAATCGGTATCCCCTGGAGGTGGAGCTTTTGGTAACCCTTGGAGCAATACATCCGTGGCTAATTAAAACAGCTGCATGCTCTGATAAGTTTTTAAATGAGGCGCAACTGAGGGAGCTAGAAAAATGCAAGTTTGATTTGAAGATAGGACCAAAAATACGGTTTGTTCTGGGCCTTGTATATCGTGTTGTCAAGGAGGAAAAGACTCTTGTCTTTTTCCACTACATTGCACCTATGAGATTGTTTGTAGAACTATTCGAGAAATTCTTTGGATGGCAGTTAGGTTGCGAAGTTTTGGTACTTAGTGGGGAACAAGATCTCTTTGAACGTGGAAGAGTCATGGATAAGTTTGAGGAGCCTAGAGGAGCATCAAAGGTACTCCTTGCTTCAATTACAGCCTGTTCTGAAGGCATTAGTCTGACAGCAGCTTCTCGTGTGATTTTGTTGGACTCAGAGTGGAATCCATCAAGAACAAGGCAAGCTATTGCCCGTGCCTTTCGTCCTGGTCAGCAAAGGATTGTATATGTGTATCGGCTTTTGGTGACGGGTACAATGGAGGAAGAAAAATATCGCAAAACCACCTGGAAAGAGTGGGTTTCAAGAATGATTTTTAGTGAGGATTTTGTGGAGGATCAATCAAAATGGCAAGCAGAAAAGCTTGAAGATGATATACTTCAGGAAATGATTGCCGAAGACAAGTCTAAAATATTCCATGTGATAATGAAAGATGAGAAAGCTTCAACCAACTGA 4917 0.3897 MSHKKRNLYQSKRSLKSHPFEAFLSGSWKAVELIKIEGGTSTLHFINSQNRVLKKGPDSDIRIRSRKATLSDCSCFLRPGIDVCVLSASQQDDNSGKICLEPGWVDARIRSVQRKPHESRCSCEYFVNLYVNQGCYDLEMRSLNKESKVVGINQISILQKLDRNPCGDQHYRWESSEDCFEARKTKLFAGKFLSDFAWLVVASALKQVSFCVRSVENKIVYQILGCERSSSSLNCNSLKQVNFRVDNGMLVPIVAHIVLSDDKKIDQAKDASEDEISPVSCTEGLRRSKRRNIEPERYLGCDGVFKLDFGSVRTSLPKSNTSKDGVDLQANCLEEDIDACQNINKINTCQEVLVNKSGAASGKVKLDDVDKEGHKTQPVSDSLPDGGGPVAHDHSYLNTNNTGNSRHENCVFSKYNHLTHCPKLNRKIVDPWTFEPYDHLPKVPDPENSAKEIDDKSSLCYSDTRNVQRKDLYGPEDMDTENRWEGMHSNKEIQGKNYHSPMRSKSCGEERTYKDRSLSDAENCAKEIDDKSPKCYFGTCNVQMKDLSGLVDVDTENRSEGIHSDKEIQREKYQPPTTRSKSRGEERTCKDRSSSDAENCAKEIDDKSSGCYYFGACNVQRKNLSCLEDMDTENRCEGTHSDKEIQEEKYQPPTTRSKSHGGERTYKGRSASHAENSAKEIVDKSSRCYYFSASNLQRKDLSGRGYMDSENRWERHSEEIQGEKYQPPTTRSQSRGGERTYKDRSSSHAENSAKGIGDKSSSCYYFSASNLQRKNLSSGEDMDAENRWEGIQERTCKARSLSDAENCAKEVGDKSSRCYYFGTCNVHRKDLSGLEDMDTENRPDRIRSNKEIQEKKYYLPMTRSKSFTHSEERTYKDRSLSDAAYKELIDFYLKNTDMAPTKEEPPIPDQWVEFKATSNYGQKWGAKPDGEVSEIDLLWREMEVALASNYIFDNIEDSKAAVFSETEENSDKLCHHDFRLNEEIGIYCCKCGYVSTEIKDISPPFVQNLGWQQDEKQWNAAKANEDDSLHLFSNHPSTDMPVSEENDIWGLIPELTSKLHVHQKKAFEFLWKNISGYVEPASVKAASKRIGGCVISHSPGAGKTFLIIAFLASYLKLFPGEKPLVLAPKTTLYTWYKEFIKWEIPLPVYLIQSQRRAHGACKESLVIPGVPKPNGDVRHLLDSLEKIQKWHSHPSVLVMSYTYFSRLMGENSKFSHRKYMAEVLRKSPGVLILDEGHNPRSTESRLRKALMKVETELRILLSGTLFQNNFCEYFNTLFLARPKFVHEVLRELDPKYKRKKGRAERKPNFIEARARKLFLDKIAKKIDSGDSDERLQGLNMLRKITNGFIDVYEGGGSDSLPGLHVYTLLMNITDYQDQLFHALYEKIADSNRYPLEVELLVTLGAIHPWLIKTAACSDKFLNEAQLRELEKCKFDLKIGPKIRFVLGLVYRVVKEEKTLVFFHYIAPMRLFVELFEKFFGWQLGCEVLVLSGEQDLFERGRVMDKFEEPRGASKVLLASITACSEGISLTAASRVILLDSEWNPSRTRQAIARAFRPGQQRIVYVYRLLVTGTMEEEKYRKTTWKEWVSRMIFSEDFVEDQSKWQAEKLEDDILQEMIAEDKSKIFHVIMKDEKASTN 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1785 1638 SMART helicmild6 1473 1558 IPR001650 -
Prci2g1785 1638 MobiDBLite consensus disorder prediction 712 757 - -
Prci2g1785 1638 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 580 1637 IPR044567 GO:0080188
Prci2g1785 1638 Pfam Helicase conserved C-terminal domain 1441 1557 IPR001650 -
Prci2g1785 1638 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1445 1605 IPR001650 -
Prci2g1785 1638 MobiDBLite consensus disorder prediction 364 403 - -
Prci2g1785 1638 Gene3D - 1032 1325 IPR038718 -
Prci2g1785 1638 MobiDBLite consensus disorder prediction 634 679 - -
Prci2g1785 1638 SMART ultradead3 1055 1291 IPR014001 -
Prci2g1785 1638 MobiDBLite consensus disorder prediction 557 592 - -
Prci2g1785 1638 MobiDBLite consensus disorder prediction 364 378 - -
Prci2g1785 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1358 1623 IPR027417 -
Prci2g1785 1638 Pfam SNF2-related domain 1062 1382 IPR000330 GO:0005524|GO:0140658
Prci2g1785 1638 Gene3D - 1361 1638 IPR027417 -
Prci2g1785 1638 CDD SF2_C_SNF 1433 1569 - -
Prci2g1785 1638 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1084 1283 IPR014001 -
Prci2g1785 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1058 1286 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1785 Prci-Chr2 13115329 13122745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1785 1456 1576 RAD5 or RAD16-like Gene Family AT5G43530 38.017 9.70e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci2g1785 SNF2_N 1.8e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1785 K10875 - qsa:O6P43_013801 1113.98