Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1678 ATGGGAACATCAGGGCTTGATGATATAGACCGGCACGCCGTTTCTTCGTCATCGTCATCTGCCGGGGTTGTAAATACGACTGATGGAAACAGCACTGCCAGTTCTGTAAGTGGAACGTGGTATGGAGTGCGGTTGCCTTCTCCATTGTCCGTTTTACTGGAATACTCTGGCCGTCTCCGCTCGAGCTCTTCAATTGGCTATTATGAGTCTGTGATTGACAACAACGAAGTTGCTGCTTCTGAATTACGACCTGACCGTCAAACCTCTTCGTTGGATTCTAGTGCTGCAACCGTTTGTAGTGGCCGCAGCGATAGGTGTTCAGGGGAAGTTGCGATACGAATTGGTGGAGCAGTTGAACAGAATCACGATGCAGGGTTGGGTTGGGTTTCTTCGTCGTCTCAAAATCAGTCTGTAGACGATGATTTGATGGGAAATGAAGGTGGAATGCCTGTGCTGGACGAGGATGCTGATGGTAGCAATGGAATTACGGCTGGTGAGAGAACTCCTCTTGTGTCCTCATCATCGTCTCTAGCAGGTAGTACTAGTGGGCAGGAAGACACTGGTTCTGGGAATGGCCCCGAAAGTAACCTTCGGGATTTATCGTCTCACGAAAGTTATAATTTTCAGCAACTTGCTAAATGGCTCGAACAGGTTCTTCCTTTCTCGCTGTTGTTGTTGGTTGTGTTCATTCGCCAGCATTTGCAAGGTTTCATCGTCACAATTTGGATTTCAATCGTGATGTTCAAGTCAAATGAAATGGTTAAGAAGCAGACAGCTCTAAAGGGAGATAGGAAAGTCTCAGCTCTTATCAGTATGTCATTTCTCTTCATGAGCCATGTGATAGGCGTTTACTGGTGGTACCAAGATGATGATCTTTTGTGCCCACCACTCTTCTTGCTTCCTCCAAAAACCACACCTCATTTCTGGCATGCAATATTCATCGTTCTGGTTAACGACATGCTTGTGCGGCAAGCGGCAATGTCTTTGAAGTGTTTGCTACTTATATATTTCAAAAATGACAGAGGTCACAGCTTCCGTCTGCAGGCTCAAATATTAACTCTGGTTGAGCACACAATGCTGCTGTACCGTACCTTGTTGCCAGCACCTGTTTGGTACCGATTTTTCTTAAACAGGGAATATGGAAGTCTCTTTTCATCGCTGACCACAGGGTTGTACCTAACTTTCAAGTTAACATCTATTGTTGAGAAGGTCCAATGCTTCTTTTCTGCATTAAAAGCATTGTCAGGCAAGGATATTCTTTATGGTGTTTATGCTACAAAGGAACAGGTAAATGCCGCGGGTGACCTTTGTGCTATATGCCAGGAGAAGATGCGTGGTCCTATCCTGTTGCGCTGTAAACACATTTTCTGTGAGGAGTGTGTGTCAGAATGGCTTGACAGAGAAAGAACTTGTCCACTATGCCGGGCATTGGTGAAGGCTGGTGATATTCGGTCTTTCGGTGATGGATCAACAAGCCTGTTTTTCCAGCTATGTTAA 1497 0.4556 MGTSGLDDIDRHAVSSSSSSAGVVNTTDGNSTASSVSGTWYGVRLPSPLSVLLEYSGRLRSSSSIGYYESVIDNNEVAASELRPDRQTSSLDSSAATVCSGRSDRCSGEVAIRIGGAVEQNHDAGLGWVSSSSQNQSVDDDLMGNEGGMPVLDEDADGSNGITAGERTPLVSSSSSLAGSTSGQEDTGSGNGPESNLRDLSSHESYNFQQLAKWLEQVLPFSLLLLVVFIRQHLQGFIVTIWISIVMFKSNEMVKKQTALKGDRKVSALISMSFLFMSHVIGVYWWYQDDDLLCPPLFLLPPKTTPHFWHAIFIVLVNDMLVRQAAMSLKCLLLIYFKNDRGHSFRLQAQILTLVEHTMLLYRTLLPAPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSIVEKVQCFFSALKALSGKDILYGVYATKEQVNAAGDLCAICQEKMRGPILLRCKHIFCEECVSEWLDRERTCPLCRALVKAGDIRSFGDGSTSLFFQLC 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1678 498 MobiDBLite consensus disorder prediction 1 37 - -
Prci2g1678 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 484 IPR013083 -
Prci2g1678 498 ProSiteProfiles Zinc finger RING-type profile. 437 475 IPR001841 -
Prci2g1678 498 MobiDBLite consensus disorder prediction 126 199 - -
Prci2g1678 498 Pfam Zinc finger, C3HC4 type (RING finger) 435 478 - -
Prci2g1678 498 MobiDBLite consensus disorder prediction 10 37 - -
Prci2g1678 498 ProSitePatterns Zinc finger RING-type signature. 452 461 IPR017907 -
Prci2g1678 498 MobiDBLite consensus disorder prediction 82 101 - -
Prci2g1678 498 SMART ring_2 437 474 IPR001841 -
Prci2g1678 498 SUPERFAMILY RING/U-box 431 479 - -
Prci2g1678 498 CDD RING-HC_RNFT1-like 435 475 - -
Prci2g1678 498 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 18 497 IPR044235 GO:0061630|GO:1904294
Prci2g1678 498 MobiDBLite consensus disorder prediction 126 141 - -
Prci2g1678 498 MobiDBLite consensus disorder prediction 165 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1678 Prci-Chr2 12497387 12502977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1678 47 497 C3H Transcription Factor Family AT5G01960 56.541 9.23e-175 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1678 - K22379 qsa:O6P43_020068 564.688