Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1650 ATGATGGAACGGAGCAGATCCCTAGGGGTGGTGGATAGAGAAGACGAGTTTGATGATGATGAAGATCAGCAGGAGAGTATGATCAAGAGCGAAGTGAAAGCCTTGTCCTTCTTTAAACTGTTGAGCTATGCCGATGCAGTGGATTGGATTCTCATGGCGTTGGGAGCTCTGGGTTCCGTAGTCCATGGCATGGCTTTCCCTGTTGGCTATCTCTTGCTCGGAATGGCTCTTAATACTTTTGGCAACAATATCAATGACAGTGACGCGATGGCTAGAGCTCTTAAAGAAAAGGTTGTTCCCTATGTGTGGTACATGGCCATCGCCACATTTCCTGCTGGAATACTTGAGACGGGGTGTTGGATGTATACAAGTGAGAGACAAATAGCAAGGCTGAGATTAGCATACCTAGGAGCAGTACTAAGCCAAGAGATTGGAGCTTTCGATACAGAACTAACAAGTGGCAAAATTATCAGTGGGATCAGCAGCCACATGAGTATCATACAAGATGCTATTGGCGAGAAGCTGGGTCACTTTACCTCATGCTTCGCCACTTTCTTCTCTGGACTTGTGATTGCTGCATATTGCACCTGGGAAATTGCACTTCTGTGTTTAGTGGTTGTTCCCCTTATTCTTCTGATTGGTGCCACCTACACCAAGAGAATGAACAACATATCAACTACAAAAATGAATTACCAGTCTCAAGTCACAGCTATGATTGAACAGACAATATCACAAATAAAAACGGTATATGCCTTTGTTGGAGAGATTTCTGCCATCAAATCCTTCACAGAAAACATGGACAAATTGTACATCATAAGCAAAGGAGAGTCACTTCTAAAGGGGGTAGGAACAGGGATGTTCCAAACTGTAAGTTTTGTTTCTTGGGCTCTTATTGTGTGGGTTGGAGCTGTTGTGGTCACAGCTCATCGAGCTTCCGGAGGAGACATTATTACTGCAGTCATGAGCATTCTCTTTGGTGCCATATATTTGACTTATGCTGCACCAGATATGCAAATATTCAATCAGGCTAAAGCAGCAGGATATGAGATTTTCCAAGTGATCCAAAGAAAGCCACTCATAAATAACATATCAGAAGGAAAGACACCTCAGAAGATTGAAGGCTCCATTGAATTGCGTCATGTTCACTTTTCCTACCCATCACGCCTGGAGAAACCTATCCTTCAAGGTTTTTCCTTATCGATCCCAGCAGGCAAGACAGTAGCATTAGTTGGTAGTAGTGGATGTGGAAAGAGTACTGTCATATCCCTAGTTTCCAGATTTTATGAAGCCTCAAAAGGAGAAATTTTCATTGATCACCATAATATCAAGGATCTTGATCTGAAGTTCCTTAGAAGAAACATAGGGGCTGTTTCCCAAGAACCTTCACTTTTTACAGGCACCATCAAGGATAACTTGAAAGTGGGAAAAATGGATGCTGATGATCAAGAGATACAGAGTGCAGCAGAAATGTCAAATGCACACTCTTTCATATCACAACTTCCAGATCAGTACTTAACAGAGAACGGACAAGTCTCAGAAATAGGAACACATAACAGTTTGCTAGAAGCAAGTCCATTCTATAATGCACTATTCAACATGCAGAACCTTGAACAAGTTCCTGATTTTAGACCTTCAAGCTCAAAATATAAAACTTCAACTGTCCGAAAGGAAGAATACTTTGAAGAAATTAGATCACAGGAGAATCAACTTGAGATGCTAGAAATTCTCACAGAGAATTCATTGAAAGAGGAACAGATTGGCAGAAAAGAAAGAAGTATTTTTTTTAGAATCTGGTATGGTCTAGAGAAAAGAGAGCTTGCAAAGACTGCTATTGGCGCCTTTGCAGCAGCTTTTTCTGGCATCTCAAAGCCTGTTTTTGGATTCTACATCATCACCATTGGAGTGGCGTATTTCGGTCACGAAGCAAAGCAGAAAGTCGCATTGTATTCTGTCATCTTCGCTGCAATAGGGTTACTTTCATTATTCAGTCACACCTTGCAGCATTACTTCTTTGGAATAATTGGAGAAAAGGCCATGGGAAATCTCAGACGATCTCTTTATTCAGGAGTGCTTCGTAATGAAGTTGGCTGGTTTGACAAACCTGAGAACAGTGTGGGTTCACTAACCTCACGCATTATCAATGACACAACCATGGTCAAAATCATAATTGCTGATCGCATGTCTGTAATTGTCCAATGCATTTCTTCCGTACTGATAGCAACAGTGGTGAGCATGGTTGTTAACTGGAGAATGGGCTTAGTAGCTTGGGCAGTGATGCCTTGCCACTTCATAGGTGGTTTGGTTCAAGCTAAGTCTGCCAAAGGATTCTCAGGAGACAACTCTGCTGCACATTCTGAACTTGTTGCTCTTACATCTGAGTCCACTACCAACATCAGGACTGTTGCATCATTTTGCCATGAAGAGCACGTGTTGAGGAAAGCCAAAGCATCCTTAGACATCCCAAAGAAGAAGTACAGAATTGAAAGCATCAAATATGGGATCATTCAAGGCTTCTCTATTTTCTTATGGAATGTTGCACATGCTGTAGCTTTGTGGTACACAGCAATTCTGGTCGAAAGACGCCAATCTTCCTTTGAAAATGGCATAAGATCCTACCAGATTTTTTCTCTCACTGTCCCTTCCATCACAGAATTATACACGCTAATCCCCACTGTCATCTCTGCTGTCAATGTACTTACACCAGCATTCCAAACCCTTGATCGTAAAACTGAAATTGAACCAGATACCCCAGAAGATATAGAGCCCAAGACAATACAAGGAAATATTGAATTTCAGGGGGTAAAGTTCAACTATCCATTGAGACCTGGGGTGAATGTTCTTGACAATTTCAGTTTAAAAATTAAAGCTGGATCAAAGGTGGCTTTTGTGGGGCCAAGCGGGGCTGGGAAATCCTCTGTATTGGCCCTTTTACTCAGATTTTATGATCCAAGAGAGGGAAAGGTAGTCATTGACGGGAAAGACATAAAGGATTATAATCTAAGATGGTTAAGAAAACAGATGGGATTGGTACAACAAGAGCCGATGCTTTTTAACTGCTCTATAATAGAGAACATTTGCTATGGCAACAAGGAAGCTTCTGAAAGTGAAATAGTGGAGGTCTCTCGCGAAGCAAACATACATGAATTTGTAAGTAGTCTACCAAATGGGTATGACACTGTGGTTGGAGAGAAAGGATGCCAGCTTTCAGGAGGGCAAAAGCAGAGAATAGCAATCGCTAGAACCTTGTTAAAGAAACCAACGATTTTGCTCCTTGATGAAGCAACTAGTGCTCTTGATGCTGAGTCTGAAAGAACAGTGATAAGTGCAATGAAGGCAATAAGTCAAAAGGGAGGGAATGAGTTGCATTCAAGAACCACTCAGATCACAATAGCACATAGGCTTTCTACTGTAATAAACTCAGATACCATTGTTGTTATGGAGAAAGGAAAAATCATGGAGATGGGGTCCCACTCAACCTTGATAGAATCAGAAACAGGGCTTTACTCAAGGCTATTCAGGTTGCAGAGCTTTGAAGAAAGCTGA 3543 0.4166 MMERSRSLGVVDREDEFDDDEDQQESMIKSEVKALSFFKLLSYADAVDWILMALGALGSVVHGMAFPVGYLLLGMALNTFGNNINDSDAMARALKEKVVPYVWYMAIATFPAGILETGCWMYTSERQIARLRLAYLGAVLSQEIGAFDTELTSGKIISGISSHMSIIQDAIGEKLGHFTSCFATFFSGLVIAAYCTWEIALLCLVVVPLILLIGATYTKRMNNISTTKMNYQSQVTAMIEQTISQIKTVYAFVGEISAIKSFTENMDKLYIISKGESLLKGVGTGMFQTVSFVSWALIVWVGAVVVTAHRASGGDIITAVMSILFGAIYLTYAAPDMQIFNQAKAAGYEIFQVIQRKPLINNISEGKTPQKIEGSIELRHVHFSYPSRLEKPILQGFSLSIPAGKTVALVGSSGCGKSTVISLVSRFYEASKGEIFIDHHNIKDLDLKFLRRNIGAVSQEPSLFTGTIKDNLKVGKMDADDQEIQSAAEMSNAHSFISQLPDQYLTENGQVSEIGTHNSLLEASPFYNALFNMQNLEQVPDFRPSSSKYKTSTVRKEEYFEEIRSQENQLEMLEILTENSLKEEQIGRKERSIFFRIWYGLEKRELAKTAIGAFAAAFSGISKPVFGFYIITIGVAYFGHEAKQKVALYSVIFAAIGLLSLFSHTLQHYFFGIIGEKAMGNLRRSLYSGVLRNEVGWFDKPENSVGSLTSRIINDTTMVKIIIADRMSVIVQCISSVLIATVVSMVVNWRMGLVAWAVMPCHFIGGLVQAKSAKGFSGDNSAAHSELVALTSESTTNIRTVASFCHEEHVLRKAKASLDIPKKKYRIESIKYGIIQGFSIFLWNVAHAVALWYTAILVERRQSSFENGIRSYQIFSLTVPSITELYTLIPTVISAVNVLTPAFQTLDRKTEIEPDTPEDIEPKTIQGNIEFQGVKFNYPLRPGVNVLDNFSLKIKAGSKVAFVGPSGAGKSSVLALLLRFYDPREGKVVIDGKDIKDYNLRWLRKQMGLVQQEPMLFNCSIIENICYGNKEASESEIVEVSREANIHEFVSSLPNGYDTVVGEKGCQLSGGQKQRIAIARTLLKKPTILLLDEATSALDAESERTVISAMKAISQKGGNELHSRTTQITIAHRLSTVINSDTIVVMEKGKIMEMGSHSTLIESETGLYSRLFRLQSFEES 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1650 1180 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 342 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g1650 1180 CDD ABC_MTABC3_MDL1_MDL2 929 1175 - -
Prci2g1650 1180 Gene3D ABC transporter type 1, transmembrane domain 554 895 IPR036640 GO:0005524|GO:0016020
Prci2g1650 1180 ProSitePatterns ABC transporters family signature. 1068 1082 IPR017871 GO:0005524|GO:0016887
Prci2g1650 1180 PANTHER ABC TRANSPORTER B FAMILY 582 1174 IPR039421 -
Prci2g1650 1180 MobiDBLite consensus disorder prediction 1 24 - -
Prci2g1650 1180 Gene3D - 506 553 IPR027417 -
Prci2g1650 1180 SMART AAA_5 956 1150 IPR003593 GO:0016887
Prci2g1650 1180 SMART AAA_5 403 604 IPR003593 GO:0016887
Prci2g1650 1180 CDD ABC_6TM_Pgp_ABCB1_D2_like 603 912 - -
Prci2g1650 1180 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 610 894 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g1650 1180 Pfam ABC transporter 394 493 IPR003439 GO:0005524
Prci2g1650 1180 SUPERFAMILY ABC transporter transmembrane region 600 914 IPR036640 GO:0005524|GO:0016020
Prci2g1650 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 920 1175 IPR027417 -
Prci2g1650 1180 FunFam ABC transporter B family member 4 919 1180 - -
Prci2g1650 1180 SUPERFAMILY ABC transporter transmembrane region 39 358 IPR036640 GO:0005524|GO:0016020
Prci2g1650 1180 Pfam ABC transporter transmembrane region 611 873 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g1650 1180 Pfam ABC transporter transmembrane region 53 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci2g1650 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 534 IPR027417 -
Prci2g1650 1180 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 350 - -
Prci2g1650 1180 Coils Coil 556 583 - -
Prci2g1650 1180 Gene3D - 919 1179 IPR027417 -
Prci2g1650 1180 Pfam ABC transporter 947 1096 IPR003439 GO:0005524
Prci2g1650 1180 Gene3D - 366 505 IPR027417 -
Prci2g1650 1180 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 599 IPR003439 GO:0005524
Prci2g1650 1180 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 929 1173 IPR003439 GO:0005524
Prci2g1650 1180 Gene3D ABC transporter type 1, transmembrane domain 39 365 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1650 Prci-Chr2 12336551 12344666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1650 29 510 Calmodulin-binding Proteins AT2G36910 40.123 3.14e-112 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1650 K05658 - qsa:O6P43_014878 976.852