Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1624 ATGGGCGAGATCGTGTTGAGTGCTGAGAAGGTTCTGGAAGCCATGGAGGCTGAGACCGAGACTCATAAGCAGAAGGGGACGGCGGAGGAGGAAGAGAGTGGAACAGAGAGTAAAGATGACGAACTGAACAATGGATTGATGAGGTGGAAGAAGTTCCTGCCCAGGATGACATTGAGGGTGTTGTTGGTTGAAGCTGATGATTCTACCCGGCAGATTATAGCCGCGCTTCTCAGGAAATGCAGCTACAGAGTGGCTGCTGTTCCTGATGGCTTGAAGGCTTGGGAAATTCTGAAGGGAAAATCACATAATGTTGATCTTATACTAACAGAAGTAGATTTGCCATCGATATCTGGCTATGCTCTTCTCACATTAATTATGGAGCATGAAATGTGCAAAAACATTCCTGTCATAATGATGTCTTCGCAAGATTCAATCAACACAGTCTACAAATGCATGTTGAGAGGTGCTGCTGACTACCTTGTTAAGCCCCTTAGAAAAAACGAGCTGAGGAACTTGTGGCAGCATGTTTGGAGAAGACAATCTTCAACCACTGGTGTAAACGGTCTTGAAGATGAGAGTGTTGCACAACCGAAGGCTGAAGCCACTGCTGAAAACAATGCTCCAGATAATCATTCAAGTGGTGATGCTGCATGCATTCAAAGGAACAAGGAATTAATTGAGAAAGGAAGTGATGCTCAGAGCTCTTGTGCAAAGCCTGATTTGGAAGCTGACAGTGCTCCTGTGGATCATGTGTACGAGTCTTCCCAAGCAAAGCATGCTGAACCATACCCAAGTGAAACAAAAATCCAGGAGGTTGAAATGTGCATTCAAGCGGACCAGACCTTGACTGTGCATGACAATCACGCTGGAGGATTGACAGTTGAGATCCGCAAAAATGGTGAGACTAGTTCAGCTTATGGCAAGGATGGTGACCAAGAACATTTTAGCAGTCCTGTCGCCAGTCAGGAGGCTTATGACAATCACAATGTTCAAATAACCTCTTCAAAGGAAGCTATTGACTTGATTGGAGCATTTCGAAATCATCCAAACTGCAGTCACAAAAGTTCCTCGGTCAATTGCACGGGCAAGTTTGACTTCTCTCCTCAGCTGGATCTTTCCTTGAGAAGATCGCATCCCAGCAACTTTGAGAATGAAGCTACTAAAGAAAGGCATGCCTTGATGCATTCTAATGGCTCAGCTTTCAGGCGGTATACTAGTAGGCAAACACAAGCCCCGCCAGCAGTGTCTATAAACTGCTGCAATCAAGAAAGAGAAAGGAGAACAAATTGTGAGAACAATATCTCAAACATTGTAGGCTATAACTCAGACGTTTCAATGCCTAATTTGCAAGGAAGTATTGTGTCTCCAGCTACACCACAATCAAAAGAATCTGAGCTCACAACTTCTCCCTCCCAGGGTAGACTTTCGCTTCCTATTCCAGTAAAAGCTGTAAGGTACGATGATCCATGCACAGCCTATGGTTCTGCACCTCTTCCTATGTTATGTACGCAGTCAGGTCCCGCAGCAACGCTAAATCAAGACTTGGTTCCACAACGTGAACCAACCTTTCAAGTGAATGGTTTTTATCAGTCAGATACCAAAGAAAACAGTTCAGAGCTGCTTTATAAACCTCAAGGTCAAAATGCAAACAACACAACAAGCCACGTTGTGTACATGCAGGAAAGTAATTGGGAACGGGCTGAGGATCGAAGACATGTCTCTCCCAGAACTGGTCAAAGTGCCTGCAGTTACAGCAATGCCGACCAGGTTGCTATTGTCAGGGCAGCTTCGGAGAGCGTGACTGAAGACGTCATAAAGAGTGGGAGTTCTCATCGATCTATCCAAAGAGAAGCAGCTCTCAACAAATTCCGCCTGAAACGGAAAGAGAGATGCTTTGAAAAAAAGGTTCGGTATGAAAGCAGAAAGAAACTTGCAGAGCAGCGTCCAAGAGTGAAGGGACAGTTTGTTCGTCAAGTGCAGCAGGATGCCTAG 1992 0.4518 MGEIVLSAEKVLEAMEAETETHKQKGTAEEEESGTESKDDELNNGLMRWKKFLPRMTLRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEILKGKSHNVDLILTEVDLPSISGYALLTLIMEHEMCKNIPVIMMSSQDSINTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTTGVNGLEDESVAQPKAEATAENNAPDNHSSGDAACIQRNKELIEKGSDAQSSCAKPDLEADSAPVDHVYESSQAKHAEPYPSETKIQEVEMCIQADQTLTVHDNHAGGLTVEIRKNGETSSAYGKDGDQEHFSSPVASQEAYDNHNVQITSSKEAIDLIGAFRNHPNCSHKSSSVNCTGKFDFSPQLDLSLRRSHPSNFENEATKERHALMHSNGSAFRRYTSRQTQAPPAVSINCCNQERERRTNCENNISNIVGYNSDVSMPNLQGSIVSPATPQSKESELTTSPSQGRLSLPIPVKAVRYDDPCTAYGSAPLPMLCTQSGPAATLNQDLVPQREPTFQVNGFYQSDTKENSSELLYKPQGQNANNTTSHVVYMQESNWERAEDRRHVSPRTGQSACSYSNADQVAIVRAASESVTEDVIKSGSSHRSIQREAALNKFRLKRKERCFEKKVRYESRKKLAEQRPRVKGQFVRQVQQDA 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1624 663 Coils Coil 5 25 - -
Prci2g1624 663 MobiDBLite consensus disorder prediction 641 663 - -
Prci2g1624 663 MobiDBLite consensus disorder prediction 452 474 - -
Prci2g1624 663 MobiDBLite consensus disorder prediction 16 41 - -
Prci2g1624 663 ProSiteProfiles CCT domain profile. 616 658 IPR010402 GO:0005515
Prci2g1624 663 SMART REC_2 58 173 IPR001789 GO:0000160
Prci2g1624 663 Pfam CCT motif 616 658 IPR010402 GO:0005515
Prci2g1624 663 Pfam Response regulator receiver domain 60 171 IPR001789 GO:0000160
Prci2g1624 663 MobiDBLite consensus disorder prediction 184 215 - -
Prci2g1624 663 CDD psREC_PRR 60 163 - -
Prci2g1624 663 ProSiteProfiles Response regulatory domain profile. 59 177 IPR001789 GO:0000160
Prci2g1624 663 PANTHER TWO-COMPONENT RESPONSE REGULATOR 58 268 IPR045279 GO:0009736
Prci2g1624 663 Gene3D - 56 291 - -
Prci2g1624 663 MobiDBLite consensus disorder prediction 199 215 - -
Prci2g1624 663 SUPERFAMILY CheY-like 58 185 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1624 Prci-Chr2 12097451 12101877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1624 38 660 Response Regulator Gene Family AT5G24470 42.047 4.01e-128 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Prci2g1624 Response_reg 1.9e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1624 K12130 - gmx:100777119 823.928