Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1617 ATGAGTGGTCGCTTTTCTCGCACCATCTATGTTGGCAACCTGCCCTCAGATATAAGAGAGTCAGAAATTGAGGATCTATTCTACAAGTATGGCCGTATATTGGATATTGAGTTGAAGATTCCACCTCGACCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATTCGTGGTCGTGATGGCTACAATTTTGATGGTTGTCGGTTAAGGGTGGAGCTTGCGCATGGTGGTAGGGGGCCATCATCAAGTGATCGGCGTGGTCATGGTGGCAGTGGTGGGAGCCGTTTTGGCATCTCACGTCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCATCTGCATCTTGGCAGGATTTAAAGGATCATATGCGGAAAGCTGGTGATGTATGTTTTGCTGAGGTTTCACGTGATAGTGAAGGTACATTTGGCATTGTTGACTACACTAATTATGACGACATGAAATATGCTATTCGTAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGAGCTTTTATTCGGGTGAAGAAATATGAGGCCAGTCCCGCAAGGAGCCGCAGTAGAAGCCGGAGCAGAAGCCCTGGAAGAAGCAGAAGTCCTAAAAGGATTAGAAGCAGGTCATTGGAGCGATCTGTTTCTAGGTCACCATCTAGGTCTAGATCAGCATCACCAATCAAATCTAGGCCTAGGTCACTGTCACGGTCTCGGTCTCGATCACAATCTGGATCACCACGCCAGGCTCGGTCAGCCAGTGGTTGA 783 0.4649 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGHGGSGGSRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAFIRVKKYEASPARSRSRSRSRSPGRSRSPKRIRSRSLERSVSRSPSRSRSASPIKSRPRSLSRSRSRSQSGSPRQARSASG 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1617 260 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 250 - -
Prci2g1617 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Prci2g1617 260 FunFam serine/arginine-rich splicing factor SR34A-like 110 187 - -
Prci2g1617 260 FunFam serine/arginine-rich splicing factor SR34A-like 2 109 - -
Prci2g1617 260 Gene3D - 110 187 IPR012677 -
Prci2g1617 260 Gene3D - 2 109 IPR012677 -
Prci2g1617 260 MobiDBLite consensus disorder prediction 187 260 - -
Prci2g1617 260 SMART rrm1_1 8 78 IPR000504 GO:0003723
Prci2g1617 260 SMART rrm1_1 111 180 IPR000504 GO:0003723
Prci2g1617 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
Prci2g1617 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Prci2g1617 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Prci2g1617 260 MobiDBLite consensus disorder prediction 222 260 - -
Prci2g1617 260 MobiDBLite consensus disorder prediction 81 103 - -
Prci2g1617 260 SUPERFAMILY RNA-binding domain, RBD 6 179 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1617 Prci-Chr2 12037856 12042445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1617 9 258 Eukaryotic Initiation Factors Gene Family AT4G34110 21.673 5.09e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1617 K12890 - gmx:100786491 350.903