Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1613 ATGGCTGTTGCTGAGAATGTTGGGGCCATAATCGGCTCTTCCGGTGACAATTTGGAAAACCGTGTAGTATCCTCTGACTCAACTGTACCTAATGAACTGGAGAAATCGAAGCTCAAACCTGGTTCCATGGGAAATGGTATAGAAACTAATGTTCAGCCCGTCAATGGTGATCAGAATCTGAACGCTGTCTTCAGCAACAAAGACATCGTTTCGACTACCATATCAGTCCCCAATAACAACTATAAGGCTCAGATGGCTCAGATTCGAAATGGATTTGAAGAAAATGGGGTCCAGACTCAACAGATGGTGATGAACAATGGTGGCTATGGCATTAACCAGATTTCTAATGGGGTGAGAAATGGTGAAGACGACAATGGTGAAAGTTTCAAGCGGGATATGAGGGATTTGGCAGAACTATTATCGAAGTTGAACCCTATGGCTGAAGAATTTGTGCCCCCATCGCTTACTAAGAATCATGGGATCTTAGGTGGTGGTGGAGGATTTGGCTACACTAACAATTTTCTATTACAGGCTAACTATGGCAATGCCAATGGTCAAATTAACAGAAGGAGGAAGAACGGCTATAATCAGGGCAAGCGAAGAGTGAATCATAAAATGGATGTGGAAAAAAGAGAAGAGATGATAAGAAGGACTGTTTATGTGTCTGATATTGATCAGCAGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGAGTATGTGGGGATCCAAATTCCATTCTTCGTTTTGCCTTCATTGAGTTCACAGATGAAGAAGGTGCTAGGGCTGCTTTGAATCTATCTGGCACTATGCTTGGATATTATCCAGTGAGAGTGCTGCCTTCAAAAACTGCCATTGCACCAGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGTTCAAGAACCATTTATTGCACAAATATTGACAAAAAGGTTGCTCAGGCAGATGTCAAACACTTCTTTGAATCTCTCTGCGGAGAGGTCCATCGCTTGAGGCTTCTTGGTGATTATCATCATTCAACTCGAATTGCGTTTGTTGAGTTCATGATGTTGTCTCAAGTTCTTTGCCTCAATATTGCAGGCTGA 1125 0.4284 MAVAENVGAIIGSSGDNLENRVVSSDSTVPNELEKSKLKPGSMGNGIETNVQPVNGDQNLNAVFSNKDIVSTTISVPNNNYKAQMAQIRNGFEENGVQTQQMVMNNGGYGINQISNGVRNGEDDNGESFKRDMRDLAELLSKLNPMAEEFVPPSLTKNHGILGGGGGFGYTNNFLLQANYGNANGQINRRRKNGYNQGKRRVNHKMDVEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVAQADVKHFFESLCGEVHRLRLLGDYHHSTRIAFVEFMMLSQVLCLNIAG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1613 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 281 IPR000504 GO:0003723
Prci2g1613 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 292 IPR000504 GO:0003723
Prci2g1613 374 FunFam Polyadenylate-binding protein-interacting protein 11 180 294 - -
Prci2g1613 374 SMART rrm1_1 315 373 IPR000504 GO:0003723
Prci2g1613 374 SMART rrm1_1 218 288 IPR000504 GO:0003723
Prci2g1613 374 MobiDBLite consensus disorder prediction 17 31 - -
Prci2g1613 374 MobiDBLite consensus disorder prediction 15 45 - -
Prci2g1613 374 Gene3D - 307 368 IPR012677 -
Prci2g1613 374 Gene3D - 178 294 IPR012677 -
Prci2g1613 374 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 138 366 - -
Prci2g1613 374 CDD RRM1_CID8_like 215 294 IPR034823 -
Prci2g1613 374 Pfam Ataxin-2 C-terminal region 140 154 IPR009818 -
Prci2g1613 374 SUPERFAMILY RNA-binding domain, RBD 217 363 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1613 Prci-Chr2 12028198 12032961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1613 216 361 Eukaryotic Initiation Factors Gene Family AT1G34140 24.161 2.53e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1613 - - pcin:129303146 721.465