Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1597 ATGATGGGGGTTGATGATGAGTATATTCAAGCATCAGAAGAAAGCTTCAGCTGCTCTGAACCACCTCAAACTCCGAGGAAGAAAAACAAAGTGGCAAATAAGAGGAGGTTTAGTGATGAACAAATCAGGTCATTGGAGTGCATATTTGAGTCAGAGTCCAAGTTAGAGCCAAGGAAGAAGATCCAAGTAGCAAGAGATCTTGGGCTACAACCTCGCCAAGTTGCCATATGGTTCCAGAACAGAAGAGCAAGAGGAAAATCGAAATGGATAGAGCAAGAATACAGGAAGCTCAGAGAGGAGTACGACAATTTAGTGTCCAGGTTTGAGACCCTTGAGAAAGAGAAGGAGTCCTTACAAGTAGAGCTGCAGAATCTGCACGATCTAATGGAGACATCTCACGATGATGAAGGGAAAAAGAGCACAAATTGGAGGAGTGAAGTGAAGCCAAGTTCCTCTTATAAGGGTTTGGAGGTTAGAGAAGGCATGCATTTACAAGATCAAAGTGATATGAGCAAGAAGAATGGGTATTCTGAAGAAACAGAAAACCAACTTCTGAGAATGGACGAGCTAGAAAAATGGTGCAGTGGGGAGCCAAGCGGTCTCTTAGATCAGCCTTGTAGTTCACAATGGTTGGATTTCTGGACTTGA 648 0.4336 MMGVDDEYIQASEESFSCSEPPQTPRKKNKVANKRRFSDEQIRSLECIFESESKLEPRKKIQVARDLGLQPRQVAIWFQNRRARGKSKWIEQEYRKLREEYDNLVSRFETLEKEKESLQVELQNLHDLMETSHDDEGKKSTNWRSEVKPSSSYKGLEVREGMHLQDQSDMSKKNGYSEETENQLLRMDELEKWCSGEPSGLLDQPCSSQWLDFWT 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1597 215 PRINTS Lambda-repressor HTH signature 59 68 IPR000047 GO:0003677
Prci2g1597 215 PRINTS Lambda-repressor HTH signature 68 84 IPR000047 GO:0003677
Prci2g1597 215 MobiDBLite consensus disorder prediction 159 176 - -
Prci2g1597 215 Pfam Homeobox associated leucine zipper 89 129 IPR003106 GO:0006355|GO:0043565
Prci2g1597 215 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Prci2g1597 215 FunFam Homeobox-leucine zipper protein ATHB-7 13 88 - -
Prci2g1597 215 CDD homeodomain 34 89 IPR001356 GO:0003677
Prci2g1597 215 Gene3D - 32 93 - -
Prci2g1597 215 SMART HOX_1 26 92 IPR001356 GO:0003677
Prci2g1597 215 Pfam Homeodomain 34 86 IPR001356 GO:0003677
Prci2g1597 215 MobiDBLite consensus disorder prediction 12 26 - -
Prci2g1597 215 SUPERFAMILY Homeodomain-like 18 87 IPR009057 -
Prci2g1597 215 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Prci2g1597 215 Coils Coil 80 131 - -
Prci2g1597 215 MobiDBLite consensus disorder prediction 130 180 - -
Prci2g1597 215 MobiDBLite consensus disorder prediction 1 35 - -
Prci2g1597 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 173 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1597 Prci-Chr2 11905236 11906707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1597 33 215 Homeobox Transcription Factor Family AT2G46680 40.000 1.72e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci2g1597 Homeodomain 7.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1597 K09338 - gmx:100499926 256.144