Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1575 ATGGCCGGTTCCGAGACCAAGTTCTTGCAGGAGTTGGTTTTGTATGCCGCGAGCGCCGCGTTGAGTTGCTTAGTTTTGTTTGTGGGTCTCCGGCAACTCGACCCGAACCGTGAGGCTTCAAAGAAGGCACTTGAGCACAAGAAGGAGATAGCCAAGCGTCTGGGTCGTCCTCTCATTCAAACAAACCCTTACGAGGATGTTATAGCTTGTGATGTTATAAATCCTGATGACATTGATGTGGAGTTTGATTCCATTGGAGGGCTGGAAAAGATCAAGCAAGCTTTATTTGAGCTGGTTATACTGCCTCTTAAACGACCAGAGCTGTTTTCTTATGGCAAGCTTCTTGGACCACAGAAAGGAGTGCTATTGTATGGACCCCCTGGTACTGGGAAAACCATGCTTGCCAAAGCTATTGCTAGGGAGTCTGGAGCTGTGTTTATTAACGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGTGATGCTCAAAAGCTTGTGGCAGCTGTATTTAGCCTGGCCTATAAGCTCCAGCCTGCCATTATATTCATTGATGAAGTTGACAGTTTTCTGGGTCAGCGCCGTTCAACAGATCATGAGGCATTATTAAACATGAAAACTGAGTTTATGTCCTTGTGGGATGGATTTACCACAGACCAAAATGCTCGAGTCATGGTCCTTGCAGCAACTAATCGTCCTTCAGAGCTTGATGAAGCGATACTTAGGCGGCTTCCTCAAGCTTTTGAAATTGGACTTCCAGATGCAAAGGAGAGGGTTGAGATATTAAAGGTTATCTTGAAGGGTGAGAGAATTGACGACAACATTGATTTTGATCACATAGCTGGCTTGTGTGAGGGTTATACGGGTTCAGATTTATTTGAACTCTGCAAGAAAGCTGCTTATTTCCCTGTTAGGGACCTGCTAGATGAAGAGAAAAGAGGGAAACAATCTCCTGCACCAAGGCCATTGTCACAATCAGATTTGGAGAAGGTCCTTACCTCTTCAAGGAAAACAAAGGTTGCTGCTAGTGAATACAGCGGACTAACCTTACGTTCACCAAGATGGACGGGGCACAGGGAGTCAGAAGACGTTGGAGTTTCAAAGTTGCCAACAGCCATCAATGATTGA 1125 0.4542 MAGSETKFLQELVLYAASAALSCLVLFVGLRQLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDDIDVEFDSIGGLEKIKQALFELVILPLKRPELFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRSTDHEALLNMKTEFMSLWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGLPDAKERVEILKVILKGERIDDNIDFDHIAGLCEGYTGSDLFELCKKAAYFPVRDLLDEEKRGKQSPAPRPLSQSDLEKVLTSSRKTKVAASEYSGLTLRSPRWTGHRESEDVGVSKLPTAIND 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1575 374 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 43 345 - -
Prci2g1575 374 ProSitePatterns AAA-protein family signature. 223 242 IPR003960 GO:0005524|GO:0016887
Prci2g1575 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 310 IPR027417 -
Prci2g1575 374 FunFam ATPase family AAA domain-containing protein 1 79 256 - -
Prci2g1575 374 CDD RecA-like_ATAD1 84 249 - -
Prci2g1575 374 SMART AAA_5 117 253 IPR003593 GO:0016887
Prci2g1575 374 MobiDBLite consensus disorder prediction 351 374 - -
Prci2g1575 374 Gene3D - 252 332 - -
Prci2g1575 374 Gene3D - 79 337 IPR027417 -
Prci2g1575 374 Pfam ATPase family associated with various cellular activities (AAA) 121 250 IPR003959 GO:0005524|GO:0016887
Prci2g1575 374 MobiDBLite consensus disorder prediction 310 334 - -
Prci2g1575 374 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Prci2g1575 374 MobiDBLite consensus disorder prediction 318 334 - -
Prci2g1575 374 Pfam AAA+ lid domain 273 309 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1575 Prci-Chr2 11712661 11723370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1575 38 317 Calmodulin-binding Proteins AT3G56690 33.099 4.74e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1575 K22530 - qsa:O6P43_014957 637.106