Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1574 ATGGCCGGTTCCGAGACCAAGTTCTTGCAGGAGTTGGTTTTGTATGCCGCGAGCGCCGCGTTGAGTTGCTTAGTTTTGTTTGTGGGTCTCCGGCAACTCGACCCGAACCGTGAGGCTTCAAAGAAGGCACTTGAGCACAAGAAGGAGATAGCCAAGCGTCTGGGTCGTCCTCTCATTCAAACAAACCCTTACGAGGATGTTATAGCTTGTGATGTTATAAATCCTGATGACATTGATGTGGAGTTTGATTCCATTGGAGGGCTGGAAAAGATCAAGCAAGCTTTATTTGAGCTGGTTATACTGCCTCTTAAACGACCAGAGCTGTTTTCTTATGGCAAGCTTCTTGGACCACAGAAAGGAGTGCTATTGTATGGACCCCCTGGTACTGGGAAAACCATGCTTGCCAAAGCTATTGCTAGGGAGTCTGGAGCTGTGTTTATTAACGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGTGATGCTCAAAAGCTTGTGGCAGCTGTATTTAGCCTGGCCTATAAGCTCCAGCCTGCCATTATATTCATTGATGAAGTTGACAGTTTTCTGGGTCAGCGCCGTTCAACAGATCATGAGGCATTATTAAACATGAAAACTGAGTTTATGTCCTTGTGGGATGGATTTACCACAGACCAAAATGCTCGAGTCATGGTCCTTGCAGCAACTAATCGTCCTTCAGAGCTTGATGAAGCGATACTTAGGCGGCTTCCTCAAGCTTTTGAAATTGGACTTCCAGATGCAAAGGAGAGGGTTGAGATATTAAAGGTTATCTTGAAGGGTGAGAGAATTGACGACAACATTGATTTTGATCACATAGCTGGCTTGTGTGAGGGTTATACGGGTTCAGATTTATTTGAACTCTGCAAGAAAGCTGCTTATTTCCCTGTTAGGGACCTGCTAGATGAAGAGAAAAGAGGGAAACAATCTCCTGCACCAAGGCCATTGTCACAATCAGATTTGGAGAAGGTCCTTACCTCTTCAAGGAAAACAAAGGTTGCTGCTAGTGAATACAGCGGACTAACCTTACGTTCACCAAGATGGACGGGGCACAGGGAGTCAGACGTTGGAGTTTCAAAGTTGCCAACAGCCATCAATGATTGA 1122 0.4545 MAGSETKFLQELVLYAASAALSCLVLFVGLRQLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDDIDVEFDSIGGLEKIKQALFELVILPLKRPELFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRSTDHEALLNMKTEFMSLWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGLPDAKERVEILKVILKGERIDDNIDFDHIAGLCEGYTGSDLFELCKKAAYFPVRDLLDEEKRGKQSPAPRPLSQSDLEKVLTSSRKTKVAASEYSGLTLRSPRWTGHRESDVGVSKLPTAIND 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1574 373 ProSitePatterns AAA-protein family signature. 223 242 IPR003960 GO:0005524|GO:0016887
Prci2g1574 373 Gene3D - 252 332 - -
Prci2g1574 373 Gene3D - 79 337 IPR027417 -
Prci2g1574 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 310 IPR027417 -
Prci2g1574 373 FunFam ATPase family AAA domain-containing protein 1 79 256 - -
Prci2g1574 373 CDD RecA-like_ATAD1 84 249 - -
Prci2g1574 373 SMART AAA_5 117 253 IPR003593 GO:0016887
Prci2g1574 373 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 43 344 - -
Prci2g1574 373 MobiDBLite consensus disorder prediction 310 334 - -
Prci2g1574 373 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Prci2g1574 373 MobiDBLite consensus disorder prediction 351 373 - -
Prci2g1574 373 Pfam ATPase family associated with various cellular activities (AAA) 121 250 IPR003959 GO:0005524|GO:0016887
Prci2g1574 373 MobiDBLite consensus disorder prediction 318 334 - -
Prci2g1574 373 Pfam AAA+ lid domain 273 309 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1574 Prci-Chr2 11712661 11723370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1574 38 317 Calmodulin-binding Proteins AT3G56690 33.099 4.21e-40 149