Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1564 ATGGCGGACGATTCAATTGATCACGCCTCACTCATTTCAGCTTCTGAATTACTTTTTCATACTGTCCGTAGTATAGCTGATATCACCAAAGCAGCCAATGAGATTCTGATCCAGAAGGATAATTTCAGAAAATTCTCTACTTCCCTGGAGAAAGTCTCATTAATATTGAAAGGACTATCAAAAGAGGGCATACACCAGGCAGAGAGCTTGAAAAGTTCCCTGGGCGTCCTAAACCAAGAAGTAAAAGTTGCTAAACAGCTGGTTTATGAGAGCAACTGCAAAAGCAAGATTTATCTGTTGATCCGTTGCAGAAAGATAGCCAAGAATTTGGATTGTTGCACGAAAAACATAAGCCGAGCAGTGAGCCTCATCCCTCTCACATCTTTGGATGTTTCTTCTGGTCTAAGTAAACAAATAAGTGAGCTATGCCAGAACATGTTAGATGATGGGTATAAAACAGCTGCAGCAGAAGAGGAAATTCTAGAAAAACTTGAGTCAGCAATACAAGAAGGAAATGCTGATCGCTCTTATGCGAATCAGTTGCTAGCTTGTATTGCAGATGCCATTGGGATCTCAACTGAACATGCTGCTATAAAGAGAGAATTTGAAGAGCTGAAAAGTGACATGCAAATTGCTGGGTCAAGAAGACATACAGCGGAAGCTCTACATGTGGAGCAGATCGTAGGGGTGCTTGAAAAAGCTGATTCCATTACTTCATCACAAGAGAAGGAGAAGAAGTATTTTGAAAAGCGAAATTCCCTGGGGCGACAACTGTTGGAGCCATTACATTCATTTTACTGTCCAATCTCACTTGATATCATGGAAGATCCTGTGGAGACTTCTTCTGGCAAAACATTTGAGAGAAAGGCAATAGAAAAGTGGCTTGCAGAAGGGAACCATAACTGTCCTTTAACCATGTTGCCTCTGGATACTTCAAAATTAAGACCTAATAAGACTCTTCGACAGTCAATTCAAGAATGGAAAGATAGGAACACCATCATTACCCTTTCTATTCTTAAGTCCAAACTTGAGAGTGACGATGTAGAGGAAATGCTTCAATCCTTAGAAAAATTGCAGGGCCTCTGCTTGGAAAGACAGATGCACCGAGAATGGGTAAAATTGGAGAATTACATCACAACTCTGATCAAGCTCCTCGGTGCTAGAAATAGAGAAATAACGAAGTGTGTTCTCTCCATCCTGTCTTTGCTTGCAAAGGACAATGAAGAGAACAAGGAAGATATTGCTAAAGTTGATAATGCACTAGAATCAATTGTTCGCTCACTTGCACGTCAAATAGATGAAAGCAAGTTAGCAGTGGAGTTGCTGTTAGAATTGTCTAGAAGTAATGTGGTGCGTGATCTCATAGGAAATGTTCAAGGAAGCATACTCCTCCTTGTAACAATGTTAAGCAGCGATGATGTTGAAGCAGCCCATAAGGCACGTGAGCTTCTGGATAACCTCTCTTTCCTTAACCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTCAAGCCTTTGCTGCGAAACCTTTCTTCAGGGACAGAAAATGTGACGATAATCATGACCAAAACTTTATCAGAAATTGAATTGACTGACCAGAATAAAGTATCAGTGATCAAAGATGGGGCACTGCCGCCACTTCTTCAGTTGCTCTCTCATTCTGACGTGCAAGTCAAGGAAGTGGCTTTAAAAGCTCTTTTACAGCTTTCAAGCTTGCCGGAAAATGGCCTTCAGATGATTAGGGAGGGTGTTGCTAAATTACTATTTGAGCTGCTATATCGTCACAGTTTACAATCAACCATTCTGCGGGAACCAGCAGCTGCCATGCTGATGCATCTCGCCATGTCAACCACTCACCAACAAGCTGATGCAGTCCAGGTTTCATTGTTAGATTCTGAGGATGACGTATTCAAATTCTTCTCACTTGTTTCCTTCACAGGACCTGATATACAATGCAAGATTCTGAAAACTTTCCTTGCAATGTGCCAATCTCCCTCTGGTTTCACCATCAGAGAAAGGTTAAGACAGCTCTCAGCTGTCCAAGTATTAGTTCACTTGTTAGAGCTGGATAACCAAACTGTGCGGGCAAACGCCGTGAAGCTGTTCTATTACTTGACAGAAGGCAGTGATTGCAGAAACTTCACATCACATGTAACTGAGAGGTGTATCAATGTCTTGCTCACCATCATCAAAACCACTGATGATGCAGAAGAGATGGTTGCTGCTATGGGTATCATCTCGAGACTTCCCAGGGAACCACATATAACCCAGTGGCTTTTACATTCTGGGGCAGTTAAAACTATCTTGGATTGTCTTTTGGATCGGCATAAACATGCCTCGCACAAATGGCAAGTCATTGAGAACTCTGTTCAAGCTCTTTGCCGCTTTACTGTCTCAACAAACCTAGTGTGGCAGAAGACAGTGGCTCAAGAAGGCATAATCCCTATCCTGGTGAAATTGCTGGATTCTGGAACATCTCTGTCAAAACAATACGCGGCCATTTCGATCAAGCAGTTTTCAGAAAGCTCATGCCTCTTAAGCAAGCCAATAAAAAAAGCAGGTATATTGAACTTCTGCTTCGTACCTCGTGAAATCGGTTGCCCGGCACACATAGGCACCTGTACAGTTGAGTCCTCATTCTGCATCATAGAGGCGGATGCTTTGAAGCCCCTCGTGAGGTTGCTTGCAGAGCAAGATATTGGAATATGTGAAGCCTCCTTAGATGCGCTTTTGACTTTGATTCACGGTGAAACACCACAGGGTGGATGTAGGGTACTTGCAGATGCAAATGCTATTACTCAACTAATTAAGTTATTGAATCTTCAGTCTGCCAGATTGCAGGAAAAAATTCTAGTAGCTCTGGAGAAAATATTTCAAGTCGATGAAATAAAGAATAAGCACAAAGCTTTAGCCATAATGCCATTGGTAGACATAACCCAGAGAAAAGACAGTCGCTTGAGAAGTCTTGCTGCCCGAGTCCTTGCACAATTGGGTGTACTTGAGAAACAGTCTTCTTATTTTTAA 3024 0.42 MADDSIDHASLISASELLFHTVRSIADITKAANEILIQKDNFRKFSTSLEKVSLILKGLSKEGIHQAESLKSSLGVLNQEVKVAKQLVYESNCKSKIYLLIRCRKIAKNLDCCTKNISRAVSLIPLTSLDVSSGLSKQISELCQNMLDDGYKTAAAEEEILEKLESAIQEGNADRSYANQLLACIADAIGISTEHAAIKREFEELKSDMQIAGSRRHTAEALHVEQIVGVLEKADSITSSQEKEKKYFEKRNSLGRQLLEPLHSFYCPISLDIMEDPVETSSGKTFERKAIEKWLAEGNHNCPLTMLPLDTSKLRPNKTLRQSIQEWKDRNTIITLSILKSKLESDDVEEMLQSLEKLQGLCLERQMHREWVKLENYITTLIKLLGARNREITKCVLSILSLLAKDNEENKEDIAKVDNALESIVRSLARQIDESKLAVELLLELSRSNVVRDLIGNVQGSILLLVTMLSSDDVEAAHKARELLDNLSFLNQNVIEMAKANYLKPLLRNLSSGTENVTIIMTKTLSEIELTDQNKVSVIKDGALPPLLQLLSHSDVQVKEVALKALLQLSSLPENGLQMIREGVAKLLFELLYRHSLQSTILREPAAAMLMHLAMSTTHQQADAVQVSLLDSEDDVFKFFSLVSFTGPDIQCKILKTFLAMCQSPSGFTIRERLRQLSAVQVLVHLLELDNQTVRANAVKLFYYLTEGSDCRNFTSHVTERCINVLLTIIKTTDDAEEMVAAMGIISRLPREPHITQWLLHSGAVKTILDCLLDRHKHASHKWQVIENSVQALCRFTVSTNLVWQKTVAQEGIIPILVKLLDSGTSLSKQYAAISIKQFSESSCLLSKPIKKAGILNFCFVPREIGCPAHIGTCTVESSFCIIEADALKPLVRLLAEQDIGICEASLDALLTLIHGETPQGGCRVLADANAITQLIKLLNLQSARLQEKILVALEKIFQVDEIKNKHKALAIMPLVDITQRKDSRLRSLAARVLAQLGVLEKQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1564 1007 SUPERFAMILY ARM repeat 880 998 IPR016024 -
Prci2g1564 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1007 - -
Prci2g1564 1007 Gene3D - 334 435 IPR011989 -
Prci2g1564 1007 Gene3D - 436 858 IPR011989 -
Prci2g1564 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Prci2g1564 1007 Pfam Armadillo/beta-catenin-like repeat 532 571 IPR000225 GO:0005515
Prci2g1564 1007 SUPERFAMILY RING/U-box 250 333 - -
Prci2g1564 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Prci2g1564 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Prci2g1564 1007 SUPERFAMILY ARM repeat 335 528 IPR016024 -
Prci2g1564 1007 SUPERFAMILY ARM repeat 503 851 IPR016024 -
Prci2g1564 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 333 IPR013083 -
Prci2g1564 1007 CDD RING-Ubox_PUB 265 314 IPR045210 -
Prci2g1564 1007 Gene3D - 867 1004 IPR011989 -
Prci2g1564 1007 Coils Coil 154 174 - -
Prci2g1564 1007 SMART arm_5 531 571 IPR000225 GO:0005515
Prci2g1564 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Prci2g1564 1007 SMART arm_5 918 959 IPR000225 GO:0005515
Prci2g1564 1007 SMART arm_5 751 798 IPR000225 GO:0005515
Prci2g1564 1007 SMART arm_5 407 447 IPR000225 GO:0005515
Prci2g1564 1007 SMART arm_5 666 707 IPR000225 GO:0005515
Prci2g1564 1007 SMART arm_5 800 841 IPR000225 GO:0005515
Prci2g1564 1007 SMART arm_5 365 405 IPR000225 GO:0005515
Prci2g1564 1007 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1564 Prci-Chr2 11609435 11614600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1564 263 1007 U-box Gene Family AT1G76390 27.673 2.53e-58 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1564 - - pcin:129302416 1879.37