Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1563 ATGGTCTTCCCTTGTAACCCCGTCTCTCACTTTACGGGTCTTCTCGATATGATGTTCAGGATTTACAGGGATCTGATTACAATCCCCTCATTTGCTCTTTTCTTGTTTTCTCTTTCTCTGCTCGTCCTGCTTTTCCTGGAAAATCCCTGCCCATTTCCAGGAAAATTCAATCAGAAATCCTTCACTCGAATTTCAGCTGATATCACCAAAGCAGCCAATGAGATTCTGATCCAGAAGGATAATTTCAGAAAATTCTCTACTTCCCTGGAGAAAGTCTCATTAATATTGAAAGGACTATCAAAAGAGGGCATACACCAGGCAGAGAGCTTGAAAAGTTCCCTGGGCGTCCTAAACCAAGAAGTAAAAGTTGCTAAACAGCTGGTTTATGAGAGCAACTGCAAAAGCAAGATTTATCTGTTGATCCGTTGCAGAAAGATAGCCAAGAATTTGGATTGTTGCACGAAAAACATAAGCCGAGCAGTGAGCCTCATCCCTCTCACATCTTTGGATGTTTCTTCTGGTCTAAGTAAACAAATAAGTGAGCTATGCCAGAACATGTTAGATGATGGGTATAAAACAGCTGCAGCAGAAGAGGAAATTCTAGAAAAACTTGAGTCAGCAATACAAGAAGGAAATGCTGATCGCTCTTATGCGAATCAGTTGCTAGCTTGTATTGCAGATGCCATTGGGATCTCAACTGAACATGCTGCTATAAAGAGAGAATTTGAAGAGCTGAAAAGTGACATGCAAATTGCTGGGTCAAGAAGACATACAGCGGAAGCTCTACATGTGGAGCAGATCGTAGGGGTGCTTGAAAAAGCTGATTCCATTACTTCATCACAAGAGAAGGAGAAGAAGTATTTTGAAAAGCGAAATTCCCTGGGGCGACAACTGTTGGAGCCATTACATTCATTTTACTGTCCAATCTCACTTGATATCATGGAAGATCCTGTGGAGACTTCTTCTGGCAAAACATTTGAGAGAAAGGCAATAGAAAAGTGGCTTGCAGAAGGGAACCATAACTGTCCTTTAACCATGTTGCCTCTGGATACTTCAAAATTAAGACCTAATAAGACTCTTCGACAGTCAATTCAAGAATGGAAAGATAGGAACACCATCATTACCCTTTCTATTCTTAAGTCCAAACTTGAGAGTGACGATGTAGAGGAAATGCTTCAATCCTTAGAAAAATTGCAGGGCCTCTGCTTGGAAAGACAGATGCACCGAGAATGGGTAAAATTGGAGAATTACATCACAACTCTGATCAAGCTCCTCGGTGCTAGAAATAGAGAAATAACGAAGTGTGTTCTCTCCATCCTGTCTTTGCTTGCAAAGGACAATGAAGAGAACAAGGAAGATATTGCTAAAGTTGATAATGCACTAGAATCAATTGTTCGCTCACTTGCACGTCAAATAGATGAAAGCAAGTTAGCAGTGGAGTTGCTGTTAGAATTGTCTAGAAGTAATGTGGTGCGTGATCTCATAGGAAATGTTCAAGGAAGCATACTCCTCCTTGTAACAATGTTAAGCAGCGATGATGTTGAAGCAGCCCATAAGGCACGTGAGCTTCTGGATAACCTCTCTTTCCTTAACCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTCAAGCCTTTGCTGCGAAACCTTTCTTCAGGGACAGAAAATGTGACGATAATCATGACCAAAACTTTATCAGAAATTGAATTGACTGACCAGAATAAAGTATCAGTGATCAAAGATGGGGCACTGCCGCCACTTCTTCAGTTGCTCTCTCATTCTGACGTGCAAGTCAAGGAAGTGGCTTTAAAAGCTCTTTTACAGCTTTCAAGCTTGCCGGAAAATGGCCTTCAGATGATTAGGGAGGGTGTTGCTAAATTACTATTTGAGCTGCTATATCGTCACAGTTTACAATCAACCATTCTGCGGGAACCAGCAGCTGCCATGCTGATGCATCTCGCCATGTCAACCACTCACCAACAAGCTGATGCAGTCCAGGTTTCATTGTTAGATTCTGAGGATGACGTATTCAAATTCTTCTCACTTGTTTCCTTCACAGGACCTGATATACAATGCAAGATTCTGAAAACTTTCCTTGCAATGTGCCAATCTCCCTCTGGTTTCACCATCAGAGAAAGGTTAAGACAGCTCTCAGCTGTCCAAGTATTAGTTCACTTGTTAGAGCTGGATAACCAAACTGTGCGGGCAAACGCCGTGAAGCTGTTCTATTACTTGACAGAAGGCAGTGATTGCAGAAACTTCACATCACATGTAACTGAGAGGTGTATCAATGTCTTGCTCACCATCATCAAAACCACTGATGATGCAGAAGAGATGGTTGCTGCTATGGGTATCATCTCGAGACTTCCCAGGGAACCACATATAACCCAGTGGCTTTTACATTCTGGGGCAGTTAAAACTATCTTGGATTGTCTTTTGGATCGGCATAAACATGCCTCGCACAAATGGCAAGTCATTGAGAACTCTGTTCAAGCTCTTTGCCGCTTTACTGTCTCAACAAACCTAGTGTGGCAGAAGACAGTGGCTCAAGAAGGCATAATCCCTATCCTGGTGAAATTGCTGGATTCTGGAACATCTCTGTCAAAACAATACGCGGCCATTTCGATCAAGCAGTTTTCAGAAAGCTCATGCCTCTTAAGCAAGCCAATAAAAAAAGCAGGTATATTGAACTTCTGCTTCGTACCTCGTGAAATCGGTTGCCCGGCACACATAGGCACCTGTACAGTTGAGTCCTCATTCTGCATCATAGAGGCGGATGCTTTGAAGCCCCTCGTGAGGTTGCTTGCAGAGCAAGATATTGGAATATGTGAAGCCTCCTTAGATGCGCTTTTGACTTTGATTCACGGTGAAACACCACAGGGTGGATGTAGGGTACTTGCAGATGCAAATGCTATTACTCAACTAATTAAGTTATTGAATCTTCAGTCTGCCAGATTGCAGGAAAAAATTCTAGTAGCTCTGGAGAAAATATTTCAAGTCGATGAAATAAAGAATAAGCACAAAGCTTTAGCCATAATGCCATTGGTAGACATAACCCAGAGAAAAGACAGTCGCTTGAGAAGTCTTGCTGCCCGAGTCCTTGCACAATTGGGTGTACTTGAGAAACAGTCTTCTTATTTTTAA 3144 0.4208 MVFPCNPVSHFTGLLDMMFRIYRDLITIPSFALFLFSLSLLVLLFLENPCPFPGKFNQKSFTRISADITKAANEILIQKDNFRKFSTSLEKVSLILKGLSKEGIHQAESLKSSLGVLNQEVKVAKQLVYESNCKSKIYLLIRCRKIAKNLDCCTKNISRAVSLIPLTSLDVSSGLSKQISELCQNMLDDGYKTAAAEEEILEKLESAIQEGNADRSYANQLLACIADAIGISTEHAAIKREFEELKSDMQIAGSRRHTAEALHVEQIVGVLEKADSITSSQEKEKKYFEKRNSLGRQLLEPLHSFYCPISLDIMEDPVETSSGKTFERKAIEKWLAEGNHNCPLTMLPLDTSKLRPNKTLRQSIQEWKDRNTIITLSILKSKLESDDVEEMLQSLEKLQGLCLERQMHREWVKLENYITTLIKLLGARNREITKCVLSILSLLAKDNEENKEDIAKVDNALESIVRSLARQIDESKLAVELLLELSRSNVVRDLIGNVQGSILLLVTMLSSDDVEAAHKARELLDNLSFLNQNVIEMAKANYLKPLLRNLSSGTENVTIIMTKTLSEIELTDQNKVSVIKDGALPPLLQLLSHSDVQVKEVALKALLQLSSLPENGLQMIREGVAKLLFELLYRHSLQSTILREPAAAMLMHLAMSTTHQQADAVQVSLLDSEDDVFKFFSLVSFTGPDIQCKILKTFLAMCQSPSGFTIRERLRQLSAVQVLVHLLELDNQTVRANAVKLFYYLTEGSDCRNFTSHVTERCINVLLTIIKTTDDAEEMVAAMGIISRLPREPHITQWLLHSGAVKTILDCLLDRHKHASHKWQVIENSVQALCRFTVSTNLVWQKTVAQEGIIPILVKLLDSGTSLSKQYAAISIKQFSESSCLLSKPIKKAGILNFCFVPREIGCPAHIGTCTVESSFCIIEADALKPLVRLLAEQDIGICEASLDALLTLIHGETPQGGCRVLADANAITQLIKLLNLQSARLQEKILVALEKIFQVDEIKNKHKALAIMPLVDITQRKDSRLRSLAARVLAQLGVLEKQSSYF 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1563 1047 ProSiteProfiles U-box domain profile. 300 374 IPR003613 GO:0004842|GO:0016567
Prci2g1563 1047 Pfam Armadillo/beta-catenin-like repeat 572 611 IPR000225 GO:0005515
Prci2g1563 1047 SMART Ubox_2 304 367 IPR003613 GO:0004842|GO:0016567
Prci2g1563 1047 Coils Coil 194 214 - -
Prci2g1563 1047 Pfam U-box domain 305 371 IPR003613 GO:0004842|GO:0016567
Prci2g1563 1047 Gene3D - 907 1044 IPR011989 -
Prci2g1563 1047 SUPERFAMILY ARM repeat 375 664 IPR016024 -
Prci2g1563 1047 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 582 624 IPR000225 GO:0005515
Prci2g1563 1047 SUPERFAMILY ARM repeat 920 1038 IPR016024 -
Prci2g1563 1047 SUPERFAMILY RING/U-box 290 373 - -
Prci2g1563 1047 SMART arm_5 840 881 IPR000225 GO:0005515
Prci2g1563 1047 SMART arm_5 706 747 IPR000225 GO:0005515
Prci2g1563 1047 SMART arm_5 405 445 IPR000225 GO:0005515
Prci2g1563 1047 SMART arm_5 447 487 IPR000225 GO:0005515
Prci2g1563 1047 SMART arm_5 915 955 IPR000225 GO:0005515
Prci2g1563 1047 SMART arm_5 571 611 IPR000225 GO:0005515
Prci2g1563 1047 SMART arm_5 791 838 IPR000225 GO:0005515
Prci2g1563 1047 SMART arm_5 958 999 IPR000225 GO:0005515
Prci2g1563 1047 CDD RING-Ubox_PUB 305 354 IPR045210 -
Prci2g1563 1047 SUPERFAMILY ARM repeat 573 891 IPR016024 -
Prci2g1563 1047 Gene3D - 374 476 IPR011989 -
Prci2g1563 1047 Gene3D - 477 898 IPR011989 -
Prci2g1563 1047 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 62 1047 - -
Prci2g1563 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 373 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1563 Prci-Chr2 11609435 11614691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1563 304 1047 U-box Gene Family AT1G20780 27.099 2.51e-58 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1563 - - pcin:129302416 1992.24