Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1488 ATGAATATTCAGCAAGAGAAGTTTGTGAGGTTTCGGGATTGGAATTCAGATAAGGGTTCTGAAAGTCAATATTCTGAAAATACCATAAGGCAGCCAGGGAGAGTAAGAAGTGCACTAAATTCAATTTCAGCTAAGTTTCAAAGAGGCTTGGAATTTGGTTCTGAGAGTATAAAGAGATTTAGAAAATCGTTCAAATCATTTCCCCCTGACAGTCGTCTGGCCAGGAGTTTCAGTTCTAGAAAGCAAATCCTTGATCCACAAGGCCCATTCCTTCAGAAGTGGAACAAGATATTTGTACTATCATGTATTATTGCTGTATCACTAGATCCTTTATTCTTTTATGTCCCTGTCATTAATGATGAGAAGAAATGCCTTTCATTAGACAACAAGATGGAGATAACAGCCACTATTTTAAGATCTTTCTCAGATATTTTTTATGTAGTCCACATAATTTTCCAATTTCGTACTGGATTTATTGCACCATCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAAAGAGGTATCTGGCATCGTACTTCTTTGTTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTTTAATTGTAATTCCAAAGATGAGCGGCCATAAATCGTTGAACACGAAGAACTTGCTGAAATTTGTTGTTTTCTTCCAATATGTGCCGAGGGTTTTACGAATTATTCCGTTATATAAAGAAGTGACAAGGACCTCTGGCATCATCACTGAAACTGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTTGCGAGTCATGTTGTAGGTGCCTTTTGGTATCTGTTTTCTATAGAAAGAGAGACAACATGCTGGCAAGATGCCTGTCTAAGAAATACTACGACCTGCAGCAAGGCATCTTTGTATTGTGATAAAAGTCAAGAGTTGAGCAATATTACAGCAACATTCTTGAATGCTTCTTGCCCAATAGTGGAGGATTCAGAGAAATTCAATTTTGGAATATTTCTTGATGCGCTTAAATCTGGTGTTGTGGAGTCAAGAGATTTCCCTCAGAAGTTTTTTTACTGCTTTTGGTGGGGCCTCAGAAATCTAAGTTCTCTTGGTCAGAACTTGGAAACCAGTACCTACGTTTGGGAGATTTGCTTTGCAGTTTTCATTTCCATCTTTGGTTTGGTGTTGTTTTCATTTCTCATTGGAAACATGCAGACATACTTGCAATCAACAACTACAAGATTAGAAGAGATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATCGACTACTCCCAGATAGTTTAAGAGAGAGAATCAGACGGTATGAACAATACAAATGGCAAGAAACCAGAGGTGTTGATGAAGATAATTTGATCAATAATCTTCCCAAGGATTTGAGAAGGGATATTAAGCGCCATCTTTGCTTGGCTCTGCTAATGAGAGTGCCTATGTTTGAGAAAATGGATGAACAACTGTTGGACGCAATGTGTGACCGTCTCAAGCCAGTGCTTCACACTGAAGAAAGCTGCATTGTTCGTGAAGGAGACCCTGTCAGTGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACCGTGACTACTAATGGCGGAAGAACAGGCTTCTTCAACTCCGAATACCTCAAGGCCGGCGACTTCTGTGGAGAAGAGCTTCTCACATGGGCTTTGGACCCTCATACCTCGTCCAATCTTCCCATCTCAACCAGGACCGTCCAAACCCTTTCAGAAGTTGAAGCCTTTGCACTAAAAGCTGACGACTTGAAGTTCGTGGCATCACAGTTTCGACGTCTTCACAGTAAGCAGATTCGCCATACTTTCAGGTTCTACTCTCAGCAATGGCGTACGTGGGCTGCATGTTTCATACAAGCAGCGTGGCGCCGCTATAGTAAAAAGAAGCTCGAAGAGTCTCTTCGGGAGGAGGAGAACAGGCTGCAAGATGCTCTGGCAAAGGCAGGTGGTAGCTCTCCTAGTCTAGGTGCCACAATATATGCTTCTAGATTTGCTGCCAATGCACTCAGGGCCCTGCGTCGGAATGGCTCTAGGAAGACAAGGGTACCGGAGAGAATACCACCCATGCTGCTTCAGAAGCCTGCTGAACCTGACTTCACTGCTGAAGAGCAATAG 2151 0.4245 MNIQQEKFVRFRDWNSDKGSESQYSENTIRQPGRVRSALNSISAKFQRGLEFGSESIKRFRKSFKSFPPDSRLARSFSSRKQILDPQGPFLQKWNKIFVLSCIIAVSLDPLFFYVPVINDEKKCLSLDNKMEITATILRSFSDIFYVVHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLASYFFVDILAVLPLPQVVILIVIPKMSGHKSLNTKNLLKFVVFFQYVPRVLRIIPLYKEVTRTSGIITETAWAGAAFNLFLYMLASHVVGAFWYLFSIERETTCWQDACLRNTTTCSKASLYCDKSQELSNITATFLNASCPIVEDSEKFNFGIFLDALKSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISIFGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYEQYKWQETRGVDEDNLINNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLHTEESCIVREGDPVSEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHTSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQIRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRALRRNGSRKTRVPERIPPMLLQKPAEPDFTAEEQ 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1488 716 SUPERFAMILY cAMP-binding domain-like 416 609 IPR018490 -
Prci2g1488 716 Gene3D Jelly Rolls 485 605 IPR014710 -
Prci2g1488 716 Gene3D Helix hairpin bin 413 478 - -
Prci2g1488 716 FunFam Cyclic nucleotide-gated ion channel 1 414 478 - -
Prci2g1488 716 CDD CAP_ED 487 618 IPR000595 -
Prci2g1488 716 ProSiteProfiles cAMP/cGMP binding motif profile. 487 571 IPR000595 -
Prci2g1488 716 SUPERFAMILY Voltage-gated potassium channels 85 409 - -
Prci2g1488 716 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 70 711 - -
Prci2g1488 716 Pfam Ion transport protein 94 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Prci2g1488 716 Gene3D - 96 411 - -
Prci2g1488 716 MobiDBLite consensus disorder prediction 687 716 - -
Prci2g1488 716 FunFam Cyclic nucleotide-gated ion channel 1 485 603 - -
Prci2g1488 716 Coils Coil 639 659 - -
Prci2g1488 716 SMART cnmp_10 487 618 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1488 Prci-Chr2 11050305 11058844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1488 1 715 Ion Channels AT5G53130 78.303 0.0 1142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1488 K05391 - gmx:100817516 1225.69