LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g1474	ATGATGGATTGCAACAAAGATGAGGCTGTTAGGGCCAAGGAAATAGCAGAGAAGAAATTTTCAGACAAGGAATATGCTGGTGCTAAGAAGTTTGCTCTCAAGGCTCTAAATTTGTATCCTGCATTGGATGGTCTTTCACAATTTTTGACCAACCTTGATGTTTATGTCTCTGCTGAGAATAAAGTTAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAACCCCTTTGATGATGAAGAGACGGTTAGAAAACAGTACAGGAAGCTGGCTCTCACTCTTCACCCTGATAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTAAGCTGGTTTCAGAGGCATGGAGTTTGTTGTCAGATAAAACCAAGAGGCTAGAATATAACCTGAAGAGGAGTTTGAAAGGCTTTCAACATAATGCTCCCATCCATTCTGGATCTCAATCAGAAGTGCCTGGTTCAAATGGTTTTTATAATTTTAACAAGAATGTAACTTCAAATGTGAGGGCTGGAAATAATAATTCCCAGGCACGCCATGCCCCGGCTCCTCGTCCACAGAAGAAGGCTGACACCTTTTGGACTATTTGTAATCGATGCAGGACTCATTATGAATATCTTAGGGTTTATTTGAATCATAGACTTCTATGTCCCAATTGTAACGAGGCTTTCTTGGCTATAGAGAAGGAGCCGCCTCCCAACTATTTCAAGTCAACAAATTGGTCTTCTCGCCAGCAGCAGCAGAGTTCTCGACATCATGCTTCAAGTAATAATCAAGCTAATGCTGGAAAAAATTTTACAGTTTCTCAAAATTCAGAAGCCAGTGGTTCTTCAGGCATGTCGTCATTTAGTAAAACAAGTTTTCAGTGGGGTCCTCGCTCTGGCATGGCTGGTTTTGGTGGTATGGATGGATCATCTGTTGCTGCTCAAGCTGCAAGTGTTGTGCAGCAGGCTAGTGAGAAAGTCAGAAGGGAACGTGAAGGAGTACCGTCAATTGCTGAATGGGAGAGGAGTCAAATGTCGAAGAGGACTGATGGTTCTTTTCACAAAGTGGAGAAACCTTGGAAGAAGAGGAGGACAGATGATACTGGCATGAATGGTATTAAAGGATACATGACAAACAATATGAGCATGGGGCAAGGAGCAGCTGGTGCAGGATATGCTCCTGATTCAAGAAAAGCTAACTGGGAAACTGAAAGAAACTATGGTTTTCCAGGCATGAAGCCTAACAGTATGAGAGAGTTGTCATTGTTTGAAACCCGAAATATGTTGGTGGATAAAGCACAAGGTGAAATTCGGAAGAAACTTGAAGAATGGAGATTGGCAGCTCAATCTAAAATCACAAGCAAGCCCAAAGAGAATAAGAGACAGAAAGGCACATTGACTGGTAAAACATCTGATCCGAAGAAGCATAAAGAGTCCATTCTAGATAATAGCTGCCATGTAGAAGGTGATTCTTTCCCTGTCACATCTGATAATACGGTTAAGGAGAATCAATCCTACATCATAATGAATGTTCCAGACCCTGATTTCCACAATTTTGACTTGGATAGAGCTGAAAATGCCTTTGGTGAGGACCAGGTCTGGGCTGCTTATGATGATGATGATGGAATGCCTCGCTATTATGCTCGAATTCACAAGGTGATATCCATGGAGCCGTTTAGAATGCGAATCAGCTGGCTTAACTCTAGGAGCAATAGTGAATTGGGTCCCATAGATTGGATAGGTGCTGGTTTTACTAAAACTTGTGGGGACTTTAGGACTGGCAGGCATGAAATAACTGAGTCATTAAATTCATTCTCACACAAGGTTAGGTGGACAAAAGGCACCAGAGGAGTCATTCGCATCTTTCCCCTGAAAGGGGAAGTATGGGCTCTTTATAAGGACTGGTCTCCTGATTGGAACGAACAGACTCCAGATGAAGTGATACACAGGTATGATATGGTGGAGGTGCTTGAGGATTTTGACGAGGAGCTCGGCGTATTAGTTGCCCCATTGATTAAGCTTCCGGATTTCAGGACTGTCTTTGGAAGGCATGCTGACCCTGACCGGTTGATGAGGATTCCTAAAGGGGAGATGTTTCGGTTTTCTCACCAAGTTCCTAATTACATGCTTACAGGCGAAGAAGCTGATAATGCTCCAAAGGGTTGTCGAGAGCTGGATCCAGCAGCTACACCTTTAGACCTTCAGACCACTCCAGGAGCCAATGAGGGATCGGGTGCTGAAAGGCCTCACGAAGACGCTTTGCCCAATTCAGCTGAAAAGGACAAAGCTTCAGAAACTAGAGGAGGGGAACAATTGGACGAGATTTTTACATAG	2313	0.4336	MMDCNKDEAVRAKEIAEKKFSDKEYAGAKKFALKALNLYPALDGLSQFLTNLDVYVSAENKVSGEMDWYGILGVNPFDDEETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNLKRSLKGFQHNAPIHSGSQSEVPGSNGFYNFNKNVTSNVRAGNNNSQARHAPAPRPQKKADTFWTICNRCRTHYEYLRVYLNHRLLCPNCNEAFLAIEKEPPPNYFKSTNWSSRQQQQSSRHHASSNNQANAGKNFTVSQNSEASGSSGMSSFSKTSFQWGPRSGMAGFGGMDGSSVAAQAASVVQQASEKVRREREGVPSIAEWERSQMSKRTDGSFHKVEKPWKKRRTDDTGMNGIKGYMTNNMSMGQGAAGAGYAPDSRKANWETERNYGFPGMKPNSMRELSLFETRNMLVDKAQGEIRKKLEEWRLAAQSKITSKPKENKRQKGTLTGKTSDPKKHKESILDNSCHVEGDSFPVTSDNTVKENQSYIIMNVPDPDFHNFDLDRAENAFGEDQVWAAYDDDDGMPRYYARIHKVISMEPFRMRISWLNSRSNSELGPIDWIGAGFTKTCGDFRTGRHEITESLNSFSHKVRWTKGTRGVIRIFPLKGEVWALYKDWSPDWNEQTPDEVIHRYDMVEVLEDFDEELGVLVAPLIKLPDFRTVFGRHADPDRLMRIPKGEMFRFSHQVPNYMLTGEEADNAPKGCRELDPAATPLDLQTTPGANEGSGAERPHEDALPNSAEKDKASETRGGEQLDEIFT	770

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g1474	770	Pfam	Domain of unknown function (DUF3444)	501	707	IPR024593	-
	Prci2g1474	770	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Prci2g1474	770	MobiDBLite	consensus disorder prediction	738	762	-	-
	Prci2g1474	770	MobiDBLite	consensus disorder prediction	161	179	-	-
	Prci2g1474	770	Gene3D	DnaJ domain	64	177	IPR036869	-
	Prci2g1474	770	SMART	dnaj_3	66	123	IPR001623	-
	Prci2g1474	770	MobiDBLite	consensus disorder prediction	445	472	-	-
	Prci2g1474	770	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Prci2g1474	770	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Prci2g1474	770	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Prci2g1474	770	Pfam	DnaJ domain	67	128	IPR001623	-
	Prci2g1474	770	ProSitePatterns	Nt-dnaJ domain signature.	108	127	IPR018253	-
	Prci2g1474	770	CDD	DnaJ	67	120	IPR001623	-
	Prci2g1474	770	MobiDBLite	consensus disorder prediction	447	472	-	-
	Prci2g1474	770	MobiDBLite	consensus disorder prediction	161	186	-	-
	Prci2g1474	770	PANTHER	BNAC03G44070D PROTEIN	2	724	-	-
	Prci2g1474	770	SUPERFAMILY	Chaperone J-domain	59	127	IPR036869	-
	Prci2g1474	770	MobiDBLite	consensus disorder prediction	234	262	-	-
	Prci2g1474	770	MobiDBLite	consensus disorder prediction	706	770	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g1474	Prci-Chr2	11012888	11019786	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g1474	5	230	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	32.906	4.80e-29	117

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g1474	-		-	cam:101501612	1044.26