Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1454 ATGGACGACGGCTTCTCTGATATTTTTGAAGATAAAGACTTGGACTTGTCTGGAGACGATCTGCTTGCTATTTTGGACTCCTTAGAGGACTTCACCAATTTTCCTCCCGCCGACAAATCCCTTGCCGCCGTTACCTCGAAACAGAACAAAGAAACCACAAGCACTCTTGAACCCGATGACGACTCACTAACTCAGCTTCAAGCTTCAACCAAAACCAAGAGACAGAAGCTTTCGGAGTCATCATCTGAAGAACCTAAGATATCTCATATCACTGTGGAGCGAAACCGAAGAAAGCAAATGAACGAGCACTTGTCCGTCCTGAGGTCCCTCATGCCCTGTTTCTATGTCAAACGAGGTGATCAAGCATCAATAATAGGAGGAGTGGTAGAGTACATCAACGAGTTGCAGCAGCTTCTGCAATCCCTGGAGGCCAAGAAACAGAGAAAAGCGTACAACGAAGTTCTGAGCCCTAGGCTCGTGTCAAGCCCAAGGCTTTCTCCGAGAGTGATTGCACCGGTGAGCCCTAGGCTAAACCTACCCATTAGCCCGGGCACGCCACAGTCAGGTAGCCCCTACAAGCCCCAACCCAGACTCTCCAACTCTCTCGAACCGTCTCCCACATCTTCTGCTTCTTCCTCCTTCAAAGACAATCTCAACGAGCTCGTCGCCAACTCTAAGCTCGTCGCCAACTCCCCCATCGCCGACGTCGAGGTTAAGTTCTCGGGGCCCCACGTCCTCTTAAAAACCTTGTCCCCTCCGATCCCAGGTCAAGCTTTAAAAATCATCTCCGCTCTTGAAGATCTGGCCCTCGAAATCCTTCAGATCAGCATCACTTCTGCTGATGAAAGCGTGCTTAACTCTTTCACCATCAAGATTGGAGTCGAATGTCAACTCAGCGCCGAGGATCTGGCTCAACAAGTCCAGCACACTTTCTCGCCACATATATTACCATAA 954 0.4969 MDDGFSDIFEDKDLDLSGDDLLAILDSLEDFTNFPPADKSLAAVTSKQNKETTSTLEPDDDSLTQLQASTKTKRQKLSESSSEEPKISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVEYINELQQLLQSLEAKKQRKAYNEVLSPRLVSSPRLSPRVIAPVSPRLNLPISPGTPQSGSPYKPQPRLSNSLEPSPTSSASSSFKDNLNELVANSKLVANSPIADVEVKFSGPHVLLKTLSPPIPGQALKIISALEDLALEILQISITSADESVLNSFTIKIGVECQLSAEDLAQQVQHTFSPHILP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1454 317 PANTHER TRANSCRIPTION FACTOR FAMA 6 311 IPR044283 GO:0003700|GO:0010052
Prci2g1454 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 158 IPR036638 GO:0046983
Prci2g1454 317 CDD bHLH_AtFAMA_like 87 158 - -
Prci2g1454 317 MobiDBLite consensus disorder prediction 44 86 - -
Prci2g1454 317 MobiDBLite consensus disorder prediction 176 214 - -
Prci2g1454 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 135 IPR011598 GO:0046983
Prci2g1454 317 Pfam Helix-loop-helix DNA-binding domain 86 136 IPR011598 GO:0046983
Prci2g1454 317 FunFam Transcription factor SPEECHLESS 73 150 - -
Prci2g1454 317 MobiDBLite consensus disorder prediction 44 75 - -
Prci2g1454 317 SMART finulus 90 141 IPR011598 GO:0046983
Prci2g1454 317 Gene3D - 73 151 IPR036638 GO:0046983
Prci2g1454 317 Coils Coil 128 152 - -
Prci2g1454 317 MobiDBLite consensus disorder prediction 180 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1454 Prci-Chr2 10848845 10851242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1454 5 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 49.713 4.18e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci2g1454 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1454 K20558 - gmx:100777437 360.918