Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1438 ATGGAGAAGCGAGAGCTGACATTGAGCAGTTTCGATGCTCCTTTCGTGCCTCATGGGAAGTTTGGATGTAGAAGTTCTCACATTTCTCAAACTCGAGAAAATGAGGATGTTCCAGCTCACAGTTTCAGCTTCGACAAGAGAGTGGAGACCTCGCGTGGTGGAACTGTCATTCGCAAAACTAAATCACTGAATGCTCAATTCTTGATCAACGTCGATGGCCTCATCAATAATGCTGCAGGAAGCTTTCATCAGATGGATTCCAACGTTAATGGTTCCTCTATCAAGGAATTAAGATATTCCCTTTCATTCACTGCACCCACCTCGCTCTCACAGGAACTCTCAGATGTCTTGAAACTGCCAGGTCCAAAGTGCGAAGATGGAGCATCTGATGTTTCTGCAGAGGAGGGATCAGAATCATGCCAGTGGACAAGAATGCAAATGGAACCAACCTTGCCAATACATCTCAAGTTTGAAGATGTGAAATACAACGTGCCGTTGAGAGGTGAGAAGTCTTCAGGAGAAGGCAAATACATTCTGCATGGTATTACTGGTTCGGTACGCCCAGGAGAGATTCTTGCTTTAATGGGACCATCAGGAGGTGGTAAAACAACACTACTTAATATCTTGAGCGGAAGGACCAGGTTTAACAGTGGTTCCATCACTTACAATGACAGACCATATACCAAATCACTAAAGAAGAGGATTGGATATGTAACGCAAGACGATGTCGTGTTCCCTCATCTTACAGTCAAGGAAACTCTCACATATGTAGCTTTGCTTCGTCTCTCGAAGGATCTCTCAATAACACAGAAAAAAGAGAGGGTTATGAATGTTTTAAGTGAACTATGCCTCGAAAGATGCCAAGATACAGCAATTGGCGGCAATTTTATTAGAGGGGTTTCTGGGGGTGAGAGAAAAAGGGTCTGCATTGGTACAGAAATCCTACTCAACCCATCACTCTTGTTCTTAGATGAACCAACATCTGGTCTAGATTCAACCACAGCATCACGAATTGTTCAGATCCTTCAAAACATCTCTAAAGAGGGAAAGACAGTGGTGACAACAATACACCAGCCGTCAAGTAAGCTGTTCAGCATGTTTGACAAGTTGATTCTGTTGGGAAAAGGCAGCACCTTGTACTTTGGAAAAGCATCTGATGCAATGATGTATTTCTCCTCTATTGGTTGTTCTCCATTGATAGCCATGAACCCTGCAGAATTCCTCATTGACCTTGCAAATGGCAACATGAAAGAGAAATCTGTCCCTTCAGAACTTGAGGATAAGTTCCATTATGGAATCAAAACACTCGACCTAAAAAACAAGACACCCTCCCCAGTTGAAGTCCACGAGTTTCTTGTCAAGTCCTACGAAATAAGGCTTGCAAAAAGAGAGAAAGCAATGCTTCTCGAACCTGTGACAATAAAGGGAGATCAGAGTGGGATGCAAGGCAGTCCATTCCTGAGGGACTTTGGAGCAACTTGGTCTCAACAATTTTGCATTCTCTTCATGAGGGGCATTAGGCAGAGGCGTCATGAGTACTTCAGCTGTTTGCGCGTAACTCAAGTAATATCAACTGCAATAATTGTTGGACTACTTTGGTGGCACTCTGGTGCTTCTTCTTCCAGGAGTCTCCATGATCAGGCAGGGCTGCTGTTCTTTCTTTCAGTGTTCTGGGGCTTCTATCCTCTGTTTAGTGCCATCTTCATGTTCCCACAAGAAAGAGCAATGCTGGTGAAAGAGAGATCGATTGACATGTATAAACTAAGTGCCTACTTCTTAGCTAAAAACACCAGTGATGTTCCAATGGAGCTTCTAATGCCTCTAGTGTTCATGGTGATTGTGTATTTCATGGTCGGCTTGAAGCTACAATTCTCTGCATTTTTTCTCACCATCCTCACAATTTTTGTGAGTGTTCTAGCGGCTCAGGGTCTGGGACAAACCATAAGCGCAGCATTTCTAGATGTGAAGAAAGCTACTACTCTAGCCTCAATCGTGGTCATGACCTTCATGCTAACTGGTGGATTCTTTAGCCAACAAGTCCCAAGGTTTATGTCATGGGTGCGCTACGTGTCTTTCAACTACCACACTTACAGGTTGCTTTTGAAAATTCAGTATGGCTGTGTGGGTTCAACTTCTGCATCAGGTTGCAGTGAATCTACTTTAGTGGAAAATAGTGAAACTAAATTCGGGAGAGAACTGGAAGTTGGTGCTATGATAATCATGATTATTACGTATCGGCTAATAGCGTATTTATTTCTTTGGAGAATGAATATAAGGACTAATTGA 2286 0.4304 MEKRELTLSSFDAPFVPHGKFGCRSSHISQTRENEDVPAHSFSFDKRVETSRGGTVIRKTKSLNAQFLINVDGLINNAAGSFHQMDSNVNGSSIKELRYSLSFTAPTSLSQELSDVLKLPGPKCEDGASDVSAEEGSESCQWTRMQMEPTLPIHLKFEDVKYNVPLRGEKSSGEGKYILHGITGSVRPGEILALMGPSGGGKTTLLNILSGRTRFNSGSITYNDRPYTKSLKKRIGYVTQDDVVFPHLTVKETLTYVALLRLSKDLSITQKKERVMNVLSELCLERCQDTAIGGNFIRGVSGGERKRVCIGTEILLNPSLLFLDEPTSGLDSTTASRIVQILQNISKEGKTVVTTIHQPSSKLFSMFDKLILLGKGSTLYFGKASDAMMYFSSIGCSPLIAMNPAEFLIDLANGNMKEKSVPSELEDKFHYGIKTLDLKNKTPSPVEVHEFLVKSYEIRLAKREKAMLLEPVTIKGDQSGMQGSPFLRDFGATWSQQFCILFMRGIRQRRHEYFSCLRVTQVISTAIIVGLLWWHSGASSSRSLHDQAGLLFFLSVFWGFYPLFSAIFMFPQERAMLVKERSIDMYKLSAYFLAKNTSDVPMELLMPLVFMVIVYFMVGLKLQFSAFFLTILTIFVSVLAAQGLGQTISAAFLDVKKATTLASIVVMTFMLTGGFFSQQVPRFMSWVRYVSFNYHTYRLLLKIQYGCVGSTSASGCSESTLVENSETKFGRELEVGAMIIMIITYRLIAYLFLWRMNIRTN 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1438 761 Pfam ABC-2 type transporter 496 705 IPR013525 GO:0016020|GO:0140359
Prci2g1438 761 Gene3D - 154 393 IPR027417 -
Prci2g1438 761 Pfam ABC-2 type transporter 357 421 IPR043926 GO:0140359
Prci2g1438 761 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 134 750 - -
Prci2g1438 761 SMART AAA_5 188 377 IPR003593 GO:0016887
Prci2g1438 761 Pfam ABC transporter 179 328 IPR003439 GO:0005524
Prci2g1438 761 CDD ABCG_EPDR 152 382 - -
Prci2g1438 761 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 155 400 IPR003439 GO:0005524
Prci2g1438 761 ProSitePatterns ABC transporters family signature. 300 314 IPR017871 GO:0005524|GO:0016887
Prci2g1438 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 388 IPR027417 -
Prci2g1438 761 FunFam ABC transporter G family member 22 167 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1438 Prci-Chr2 10715907 10719629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1438 155 435 Calmodulin-binding Proteins AT2G36910 26.573 2.10e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1438 K05681 - jre:109005390 944.88