Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1435 ATGTTGGGTTCTGAATTCTCAGCCGGGTGTGATGCCAGTCCCAAGCCATTGCCCAGTTGGAAACCCAGCCACGTGGAGCCGTCTCCCCCCTGCCCTCGCTGTGCTTCTTCCAACACCAAGTTCTGTTACTACAACAACTACAGCTTATCCCAGCCTCGCTACCTGTGTAAATCTTGCCGTCGCTACTGGACCAAAGGCGGTTTCCTCCGCAACGTCCCCATCGGCGGCGCTGCCCGTAAATCCCGCCGTACTAAGGCCCCTAGCCTCCCGCCAAACCACCGTCTTTCCAGTTCCACCAACCTTACTCCTAACTCCGCCAAAGACTCCGAGGCTCATGATCCGTCCCAAGCCAATGGGTCGCACATCGACATGGCCCTCGTCTTCGCCAACTACTTGAGCTCCGGTCATGATTCTAATGCCGACAACGATGCTCCTCAGCCGTCCGATCCCGTCACGGATGTGGTGCCAGAGGGAGAGAGGCTTCTTCCTCGGGACGAGTCGGTGACGAGTGGAATTGAGCCGGAGTGGGAAAGCTTGTTAGGTGGCGGCGGTGGACAAGTGGTCCACGATGTTTTCTGCTTGTCTGATGCTACGACGTCGTCCTCGTCCGTCACCTGGCAGCCGCCTCTGATGCAGTTGCAGGAGGAATTGGAGAATCCCTTGCCCTTCAATTATGACGAGGATGCTCTTTCTCAATTGCCCATCGCCGATTCCTGGAACTGGAATTCCTTCGATTTTTCGACTTTGCAGGACTGA 756 0.5635 MLGSEFSAGCDASPKPLPSWKPSHVEPSPPCPRCASSNTKFCYYNNYSLSQPRYLCKSCRRYWTKGGFLRNVPIGGAARKSRRTKAPSLPPNHRLSSSTNLTPNSAKDSEAHDPSQANGSHIDMALVFANYLSSGHDSNADNDAPQPSDPVTDVVPEGERLLPRDESVTSGIEPEWESLLGGGGGQVVHDVFCLSDATTSSSSVTWQPPLMQLQEELENPLPFNYDEDALSQLPIADSWNWNSFDFSTLQD 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1435 251 Pfam Dof domain, zinc finger 29 83 IPR003851 GO:0003677|GO:0006355
Prci2g1435 251 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Prci2g1435 251 MobiDBLite consensus disorder prediction 90 116 - -
Prci2g1435 251 MobiDBLite consensus disorder prediction 1 23 - -
Prci2g1435 251 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 160 IPR045174 GO:0003700|GO:0006355
Prci2g1435 251 MobiDBLite consensus disorder prediction 135 155 - -
Prci2g1435 251 MobiDBLite consensus disorder prediction 75 118 - -
Prci2g1435 251 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1435 Prci-Chr2 10706675 10709154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1435 16 179 C2C2-Dof Transcription Factor Family AT1G21340 42.938 1.06e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci2g1435 zf-Dof 3.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1435 - - pcin:129303730 530.406