Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1366 ATGGCCGATATGTACGGTACTCCTCCCTCCCTCCTCACCTCCGTCATGCCTTCTGATTCTGATGATTTCTCCACCTTCTTCACCCACCTTCTCGATAACTCGCCCTCCTCTTCCATCCTTACCAAACCCAAGACCTCGCCGCCGCCATGGCTCCCCGTGCCGGCGGGGACCGCCGGGTTTGGCCAATTGGGGTCGGACTCCCCTCACAAAAATGGCAAGTCTGTTGGTTCTTCGGATGCAGTCTCCGATTCTTTCGACTTTTCTGATCCCTATGCTTACGTTCCTACTGATGTGAAAGAGGCTAGTGGAAATGAGTTCTTTCCGACTGGTGTCGACGATTCTGATGAAAATACCTCCTTCAAAGAACACAGGATTTCGCCGGAGATTGATCCCGGCAATTTCGTTTGCGCTACCGAGAAGAATGCTGAGGCGTCGCAGACAAAGCGAGTTCCAGCACGTACTTCCTCAAAGAGGAGCAGAGCTGCAGAGGTTCATAATATGTCTGAAAAGAGGAGGAGGAGTAGGATTAACGAGAAAATGAAGGCTTTGCAGAACTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCAATGTTGGATGAGGCGATTGAATATTTGAAGCAGCTTCAACTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTGTTTACCAGGAGGACTGCAGTCTATGGCAACGGCACTGCCTCAGACAGGGTTGAATAATTTTGACGAGTCCAACGGATATCAGAATTCTTGCTGCGGAATTGCCTCGTCCGTAAATGCTGAATGCTTGGTGCACCCAGACTTCAGCCTTCCAAAGCATTGCTGCATCTCAGACCAGCCTTTGATCATGCCCTCGATGACAAACATGACCAACCCAGATAACTCATCTGGTTTCAAATTTCACACTGGACTGCTTGACCCTTCTACATCATCCAAGGATGCACTTTCTGATGGCGCACCACAGCTCCATTTGGATACCACAAACATTGAAAAGAGCGCGTCTTCAGATGTCTCTTGA 1038 0.4827 MADMYGTPPSLLTSVMPSDSDDFSTFFTHLLDNSPSSSILTKPKTSPPPWLPVPAGTAGFGQLGSDSPHKNGKSVGSSDAVSDSFDFSDPYAYVPTDVKEASGNEFFPTGVDDSDENTSFKEHRISPEIDPGNFVCATEKNAEASQTKRVPARTSSKRSRAAEVHNMSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMCLPGGLQSMATALPQTGLNNFDESNGYQNSCCGIASSVNAECLVHPDFSLPKHCCISDQPLIMPSMTNMTNPDNSSGFKFHTGLLDPSTSSKDALSDGAPQLHLDTTNIEKSASSDVS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1366 345 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 18 309 IPR031066 -
Prci2g1366 345 MobiDBLite consensus disorder prediction 33 81 - -
Prci2g1366 345 Coils Coil 166 186 - -
Prci2g1366 345 SMART finulus 166 215 IPR011598 GO:0046983
Prci2g1366 345 MobiDBLite consensus disorder prediction 316 345 - -
Prci2g1366 345 CDD bHLH_AtPIF_like 160 222 IPR047265 -
Prci2g1366 345 Gene3D - 155 219 IPR036638 GO:0046983
Prci2g1366 345 MobiDBLite consensus disorder prediction 156 174 - -
Prci2g1366 345 Pfam Helix-loop-helix DNA-binding domain 164 210 IPR011598 GO:0046983
Prci2g1366 345 MobiDBLite consensus disorder prediction 67 81 - -
Prci2g1366 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 220 IPR036638 GO:0046983
Prci2g1366 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Prci2g1366 345 FunFam Basic helix-loop-helix transcription factor 155 218 - -
Prci2g1366 345 MobiDBLite consensus disorder prediction 140 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1366 Prci-Chr2 10338442 10341352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1366 160 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 91.667 8.45e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci2g1366 HLH 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1366 - - pcin:129303255 678.707