Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1296 ATGGACGACGCATATGCCAGATCTATTCCTGAGGTACTCGATTTCTTTGGAGTGGACCCAACAAAAGGTCTTTCTGATGGTCAGGTGGCACAGCATGCCAGACTTTATGGTATAAACGTGCTGCCGGAAGAAAGAAGGGCTCCTTTTTGGAAATTGGTCTTGAAACAATTTGATGATTTGCTTGTGAAGATATTAATAGCAGCTGCACTTATCTCTTTCATTCTGGCTTTAATCAATGGAGAAACGGGCTTAATGGCATTTCTGGAGCCTTCTGTTATTCTAATGATATTGGCTGCAAATGCAGCAGTTGGGGTGATTACAGAAACAAATGCTGAAAAGGCTCTTGAGGAGCTACGGGCCTATCAAGCTGATGTTGCAACTGTACTTCGAAATGGTTGTTTTTCCATACTTCCAGCAACTGAAATTGTTCCTGGCGATATTGTGGAAGTTTCTGTTGGGTGCAAAATTCCTGCTGATATGAGGATGATTGAGATGCTGAGTAATGAAGTACGTGTTGATCAGGCTATTCTTACAGGTGAGAGCAACTCTGTGGAAAAAGAGCTTGAAACTACCACAGCAACAAATGCTGTATATCAAGACAAAACAAACATATTGTTCTCGGGAACAGTTGTGGTTGCTGGTAGGGCAAGAGCAATTGTGGTGGGAGTTGGTCATAACACTGCCATGGGCAGCATACGTGATTCAATGTTGCAAACAGAAGATGAGGTGACACCATTGAAGAAGAAGCTGGATGAGTTTGGTACCTTTTTGGCCAAGGTTATTGCAGGGATTTGCATATTGGTGTGGGTTGTAAATATCGGACACTTTCGTGACCCTTCTCATGGGGGTTTCTTGCAGGGTGCTATTCATTATTTTAAGGTTTATTGCTGTGCTCTGGCAGTTGCGGCAATTCCAGAAGGGCTCCCTGCTGTTGTTACAACCTGTCTAGCTCTTGGAACAAAGCGGATGGCTAGGTTAAATGCTATTGTGCGGTCTTTACCTTCTGTGGAGACATTGGGCTGCACTACTGTAATTTGCAGCGACAAAACTGGAACTTTGACAACCAATATGATGTCTGTGACAAAGATATGTGTGGTTCGCTCCGCAAAACATAGTCCTGTTGTTACTGAATACAATGTTAGCGGAACAACATATGCACCTGAAGGCATGATCTTTGACAGTTCGGGAACACAGCTTGATGTTTCGGCTCGATTGCCATGTCTTCTTCACACAGCAATGTGTTCTGCACTTTGCAATGAGTCCACCCTGCAGTATAACCATGACAAAGGAAAGTATGAAAAAATTGGAGAGTCAACAGAAGTGGCACTTCGTGTCCTGGCGGAGAAAGTTGGTCTCCCTGGTTTTGATTCTATGCCATCAGCCTTGAACATGTTGAGCAAGCATGAGCGGGCATCTTACTGTAATCATTATTGGGAGGAACAATTTAGAAAGATAGATCTGTTGGATTTTTCTCGGGATCGGAAAATGATGAGTGTCCTTTGCAACCGAAATCAGCTTCATGTGTTGTTCTCCAAGGGTGCTCCAGAGAGTATCATGTCTAGATGTACAACCGTCATGTGCAATGACGATGGCTCCCTTGTGCCACTTACTGCTGATATTCGAGCTGAGCTAGACTCAAAGTTCCACAGTTTTGCAGGAAAAGAAACATTGAGATGCCTAGCTTTAGCCCTGAAATGGATGCCTTTGAGTCAACAACGCCTTTCCTATAATGATGAGAAAGATCTTACATTTATTGGGTTGGTTGGAATGCTTGATCCACCAAGAGATGAAGTAAGAAATGCGATGCTTTCATGCATGACCGCTGGCATACGTGTTATAGTTGTTACAGGGGATAACAAGTCAACTGCTGAGTCACTTTGCCGCAAGATAGGGGCTTTTGACCACTTCTTGGAATTTAATGAACATTCTTATACTGCTTCTGAGTTTGAAGAACTTCCAGCTCCGCAGCAAACTCTTGCTTTGCAACGTATGGCTCTTTTTGCCAGGGTTGAGCCATCTCATAAAAGGATGCTGGTTGAAGCATTGCAGCACCAGAATGAAGTGGTTGCTATGACTGGAGACGGTGTCAATGATGCACCTGCACTGAAGAAGGCAGACATAGGAATTGCTATGGGTTCAGGTACAGCTGTTGCCAAGAGTGCTTCAGACATGGTACTGGCTGATGATAACTTTGCTACAATTGTTGCGGCTGTGGCAGAGGGAAGGGCCATATACAACAATACAAAGCAATTCATTAGATACATGATCTCTTCTAATATTGGTGAAGTAGTCTGTATATTTGTGGCAGCTGTGCTTGGAATTCCCGATACCCTTGCCCCGGTCCAGCTGCTTTGGGTGAATTTGGTTACTGATGGATTGCCTGCTACTGCTATCGGCTTTAATAAGCCAGATTCTGATGTAATGAAGGCCAAACCTCGTAAGGTGAATGAAGCAGTGGTTACAGGGTGGCTGTTCTTCCGTTATCTAGTAATTGGAGCTTATGTTGGTCTTGCTACTATTGCTGGTTTTATTTGGTGGTTTGTTTCCTCTGACAGCGGCCCAAAACTGCCATATACTGAACTGATGAATTTTGACACTTGCCCAACAAGGCAGACAACTTTCCCATGCAGTATATTTGATGATCGACACCCATCTACTGTAGCAATGACTGTGCTTGTCGTTGTTGAGATGTTCAATGCTTTGAACAATCTTAGCGAAAATCAATCTCTTCTGGTTATCCCTCCATGGAGTAACTTATGGCTTGTTGGTTCAATAATTCTTACCCTGCTTCTTCACATGCTTATTTTGTATGTGCATCCTCTCTCTGTTCTTTTCTCTGTAACACCATTATCCTGGGATGACTGGTTGATTGTCCTGTATCTTTCATTACCTGTTATACTCATTGATGAGGTGCTAAAGTTATTCTCCAGGCGTCCTATTGGCCTGAGGTTCAGATTATGGTTCAGGAGGCCTGATTTACTTCCAAAAAGAGAATTGCGTGATAAGTAA 3009 0.4337 MDDAYARSIPEVLDFFGVDPTKGLSDGQVAQHARLYGINVLPEERRAPFWKLVLKQFDDLLVKILIAAALISFILALINGETGLMAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVATVLRNGCFSILPATEIVPGDIVEVSVGCKIPADMRMIEMLSNEVRVDQAILTGESNSVEKELETTTATNAVYQDKTNILFSGTVVVAGRARAIVVGVGHNTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICILVWVVNIGHFRDPSHGGFLQGAIHYFKVYCCALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVTKICVVRSAKHSPVVTEYNVSGTTYAPEGMIFDSSGTQLDVSARLPCLLHTAMCSALCNESTLQYNHDKGKYEKIGESTEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHYWEEQFRKIDLLDFSRDRKMMSVLCNRNQLHVLFSKGAPESIMSRCTTVMCNDDGSLVPLTADIRAELDSKFHSFAGKETLRCLALALKWMPLSQQRLSYNDEKDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHFLEFNEHSYTASEFEELPAPQQTLALQRMALFARVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKPDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFVSSDSGPKLPYTELMNFDTCPTRQTTFPCSIFDDRHPSTVAMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVGSIILTLLLHMLILYVHPLSVLFSVTPLSWDDWLIVLYLSLPVILIDEVLKLFSRRPIGLRFRLWFRRPDLLPKRELRDK 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1296 1002 FunFam Sodium/potassium-transporting ATPase subunit alpha 585 731 - -
Prci2g1296 1002 NCBIfam HAD-IC family P-type ATPase 663 777 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci2g1296 1002 NCBIfam HAD-IC family P-type ATPase 234 371 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci2g1296 1002 Gene3D - 356 593 IPR023299 GO:0000166
Prci2g1296 1002 NCBIfam calcium-translocating P-type ATPase, SERCA-type 53 848 IPR005782 GO:0005388|GO:0006816|GO:0016020
Prci2g1296 1002 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 687 981 - -
Prci2g1296 1002 CDD P-type_ATPase_SERCA 5 977 - -
Prci2g1296 1002 Pfam Cation transport ATPase (P-type) 416 525 - -
Prci2g1296 1002 Pfam E1-E2 ATPase 122 325 - -
Prci2g1296 1002 Pfam Cation transporter/ATPase, N-terminus 6 72 IPR004014 -
Prci2g1296 1002 Coils Coil 111 131 - -
Prci2g1296 1002 PRINTS P-type cation-transporting ATPase superfamily signature 692 711 - -
Prci2g1296 1002 PRINTS P-type cation-transporting ATPase superfamily signature 346 360 - -
Prci2g1296 1002 PRINTS P-type cation-transporting ATPase superfamily signature 586 597 - -
Prci2g1296 1002 PRINTS P-type cation-transporting ATPase superfamily signature 715 727 - -
Prci2g1296 1002 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Prci2g1296 1002 PRINTS P-type cation-transporting ATPase superfamily signature 608 618 - -
Prci2g1296 1002 FunFam Calcium-transporting ATPase 356 593 - -
Prci2g1296 1002 Gene3D - 22 237 - -
Prci2g1296 1002 SFLD p-type atpase 327 744 IPR044492 -
Prci2g1296 1002 Pfam Cation transporting ATPase, C-terminus 776 975 IPR006068 -
Prci2g1296 1002 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Prci2g1296 1002 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 353 590 IPR023299 GO:0000166
Prci2g1296 1002 Gene3D - 343 736 IPR023214 -
Prci2g1296 1002 SUPERFAMILY HAD-like 579 740 IPR036412 -
Prci2g1296 1002 SFLD Haloacid Dehalogenase 327 744 - -
Prci2g1296 1002 PRINTS H+-transporting ATPase (proton pump) signature 664 680 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci2g1296 1002 PRINTS H+-transporting ATPase (proton pump) signature 692 708 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci2g1296 1002 PRINTS H+-transporting ATPase (proton pump) signature 723 748 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci2g1296 1002 Pfam haloacid dehalogenase-like hydrolase 583 706 - -
Prci2g1296 1002 ProSitePatterns E1-E2 ATPases phosphorylation site. 348 354 IPR018303 -
Prci2g1296 1002 FunFam Calcium-transporting ATPase, putative 210 342 - -
Prci2g1296 1002 PANTHER CALCIUM-TRANSPORTING ATPASE 8 978 - -
Prci2g1296 1002 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Prci2g1296 1002 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 978 IPR023298 -
Prci2g1296 1002 Gene3D - 55 977 - -
Prci2g1296 1002 FunFam Calcium-transporting ATPase 112 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1296 Prci-Chr2 9694439 9723251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1296 1 1002 Primary Pumps ATPases(2) AT1G10130 82.834 0.0 1702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1296 K05853 - gmx:100783509 1790.39