Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1282 ATGGATTCTGATCAAGCCAAGCTGTTTGTGGGTGGCATTTCCCGGGACACCACCGAAGATGTTCTGAAAGACCATTTCGCCAAGTACGGCCCTGTTCTGGGTTCCACAATTTCGGTGGACCGCAACACCAAAATTCCTAGAGGCTTTGGCTTCGTTAGGTTCTCCGATGTTTCTGCCGCTGATAAAGCCCTTCAAGATACGCATGTCATACTCGGAAGAACGGTGGAAGTGAAGAAAGCAATACCTAGAAGTGAACAGCAACATCAAAACCTACCCCAGAGTAGAGGGGCGAGTAACTGTAGTAATTACGACAGTAGCAGCGACCACGTTAGCACCAAAAAGGTTTTTGTAGGAGGCTTATCCGCTGGTATATCGGAGGACGAGTTTAAGAAATATTTCGAGAGATTTGGTAGAATTACGGATGTCGTGGTGATGCAGGACAGTATAACTCACCGGCCTCGGGGGTTTGGTTTCATTACTTTTGATTCAGAAGAGTCTGTTGAAAGTGTGATGATGAAAAGCTTCCATGACTTGAATGGTAGACAGGTGGAAGTCAAGAGGGCTGTGCCAAAAGACGGGAATAATGGCTATGATGGTGTTAATAGAATGAGATACAAGAATGGAAGAGGAGCCCCTAAAAGTTCCCCTCAGTATAGTCCTAGGTACATTCCTCCTGCGGTTGCACCACTTCCCTGGTATGGTGGCGACGGGTTGTATTTTTATGGATCTAACATGTATGGTTGCTGGCTCCCTATGGGAGGTATGGTTGCAATGGATCGGCAGTTCCATTTGACGTTCCCAGGAATTTCTGGTATGGCCCCCCGGTAG 828 0.4722 MDSDQAKLFVGGISRDTTEDVLKDHFAKYGPVLGSTISVDRNTKIPRGFGFVRFSDVSAADKALQDTHVILGRTVEVKKAIPRSEQQHQNLPQSRGASNCSNYDSSSDHVSTKKVFVGGLSAGISEDEFKKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVESVMMKSFHDLNGRQVEVKRAVPKDGNNGYDGVNRMRYKNGRGAPKSSPQYSPRYIPPAVAPLPWYGGDGLYFYGSNMYGCWLPMGGMVAMDRQFHLTFPGISGMAPR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1282 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Prci2g1282 275 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 245 - -
Prci2g1282 275 SUPERFAMILY RNA-binding domain, RBD 104 211 IPR035979 GO:0003676
Prci2g1282 275 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 108 192 - -
Prci2g1282 275 SUPERFAMILY RNA-binding domain, RBD 3 97 IPR035979 GO:0003676
Prci2g1282 275 Gene3D - 1 91 IPR012677 -
Prci2g1282 275 Gene3D - 92 219 IPR012677 -
Prci2g1282 275 SMART rrm1_1 114 186 IPR000504 GO:0003723
Prci2g1282 275 SMART rrm1_1 7 78 IPR000504 GO:0003723
Prci2g1282 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Prci2g1282 275 MobiDBLite consensus disorder prediction 82 105 - -
Prci2g1282 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Prci2g1282 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 179 IPR000504 GO:0003723
Prci2g1282 275 CDD RRM2_Hrp1p 114 191 - -
Prci2g1282 275 MobiDBLite consensus disorder prediction 84 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1282 Prci-Chr2 9568802 9570843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1282 8 274 Eukaryotic Initiation Factors Gene Family AT2G36660 23.913 7.85e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1282 K14411 - gmx:100816822 382.104