Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1273 ATGAAGTCCATCAATGACAGCAGGAGCAACGATGGGAGTGGGAATAATAATAGTAATGGTCAAAACTGGTTGGGGTTTTCTCTGTCACCCCACATGAAAATGGAGGTTACTTCTGGCCCACCCCTTCATCATCACGATTATCATCAGTATCATCATCAACCTCAAGCTTCTACTGCTGCTGTTTCTAGCTCTGTTCCGACAACCTTCTGTCTGTCACCTTCTCAGCTCAGCAGTTACGGGATATGTTATGGTGCGGCGGAGAACCCAGGCTATCATTCTCCATTGACCGCCATGCCTCTCAAGTCCGATGGCTCGCTTTGTATAATGGAAGCCCTGTCTCGATCACCAACTCAAGGTGGTGCAACTATGGGGACTCATGATGCAATGGCTCTGAGCCTCGACAGCATCTACTATGGCAACCAGGCTGCACAGGCTCAATCCCATAGAGACCATTCTCTTGATTTTCTTTCGGAGCCTTTCAGACAGCAAGACCCCATATCTGTCCAGTCACATCCTTATTATTCTGGAGCTGCTTGCCATGCTGTTTATCCATCACCATTGGAGCAACAAAGCAAGGACCCCCAATTGCAACCAATGTCCGAGGAAGGCATGACTTGCCTGAAAAACTGGGTGGCTTCCGGCAGGGACTATTCTGCTCAACAAGGTTTGGAGGAGAAGAAAAATGGAACCTTAGAAAATGACAGTGGAGCTTCTGGGTCCGTTGGTAAAGTTGGGTGTGGAGATTTACAGTCCCTTAGTTTATCCGTGAGCCCTGGCTCACAATCTAGCTGTGTAAATGCTCCACAGCGGATTTCCCCCTCTTCGACTGACGTGGTGGCAATGGAAGCCAAGAAGAGAGGGCCAGGGAAGTTGGGCCAGAAACAGCCGGTGCACAGGAAATCGATCGACACTTTTGGCCAAAGAACGTCTCAGTACCGAGGCGTCACAAGGCACAGATGGACCGGTAGATATGAAGCGCATTTATGGGATAACAGTTGTAAGAAGGAAGGGCAGACCAGGAAAGGAAGACAAGTTTATTTGGGGGGCTATGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTTGCTGCCCTCAAGTACTGGGGAGCCTCAACCCATATTAACTTTCCGTTGGAAAATTACCAGGTTGAACTTGAAGAAATGAAGAACATGAGCAGGCAAGAATACGTTGCCCACTTGAGAAGAAAAAGCAGTGGTTTTTCCAGAGGGGCTTCAATGTATAGAGGAGTGACGAGGCACCATCAACATGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCAGGAAACAAGGACCTCTATCTGGGAACATTCAGCACTCAGGAGGAAGCAGCTGAAGCGTATGACATAGCTGCAATCAAGTTTCGAGGCGTGAATGCAGTTACTAACTTCGACATATCAAGATACGATGTGGAAAGGATCATGGCGAGCAACACCCTTCTCGCTGGTGAGCTGGCTCGACGAAACAAAGATAGCGAGCCAAGAATAGAAGCCATGGAGTACAATGTAGCCTCGAACCAGAGCAATGGGGTAGCGGTTCAAGCTCAAAGGAACGACAACGGCAACGGCTCGGAGTGGAAAATGTATCATCCAAACAGCTGTGAGCAGAAAACCGTGAACTGCGGAAATTACAGGAATTCAGCCATATCTGTGGCCCTACAGGATCTCATTGGGATTGACTCAGAAAGCTCGGGTCAGGCCATGCTGGAGGACACTACCAAGATAGGCACTCATTTTTCAAACCCAACCTCGCTGGTCACGAGTCTGAGCAGCTCAAGAGAGGGAAGCCCGGATAAAACTGGTCCCACCATTCTGTTTCCAAAGCCTCCTCCAATGGCTTCAAAGATTGTTGGCCCCATAGGTAGTGGAGTTAGCTCGTGGTTCCCTTCAGCAGCTTCTCAAACGTTGAGGCCAGCTCCTGCTCTTTCGATGTCTCACTTGCCAGTTTTTGCAGCTTGGAACGATGGTTGA 1989 0.4892 MKSINDSRSNDGSGNNNSNGQNWLGFSLSPHMKMEVTSGPPLHHHDYHQYHHQPQASTAAVSSSVPTTFCLSPSQLSSYGICYGAAENPGYHSPLTAMPLKSDGSLCIMEALSRSPTQGGATMGTHDAMALSLDSIYYGNQAAQAQSHRDHSLDFLSEPFRQQDPISVQSHPYYSGAACHAVYPSPLEQQSKDPQLQPMSEEGMTCLKNWVASGRDYSAQQGLEEKKNGTLENDSGASGSVGKVGCGDLQSLSLSVSPGSQSSCVNAPQRISPSSTDVVAMEAKKRGPGKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGASTHINFPLENYQVELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKDSEPRIEAMEYNVASNQSNGVAVQAQRNDNGNGSEWKMYHPNSCEQKTVNCGNYRNSAISVALQDLIGIDSESSGQAMLEDTTKIGTHFSNPTSLVTSLSSSREGSPDKTGPTILFPKPPPMASKIVGPIGSGVSSWFPSAASQTLRPAPALSMSHLPVFAAWNDG 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1273 662 SUPERFAMILY DNA-binding domain 412 473 IPR016177 GO:0003677
Prci2g1273 662 CDD AP2 310 377 IPR001471 GO:0003700|GO:0006355
Prci2g1273 662 CDD AP2 412 473 IPR001471 GO:0003700|GO:0006355
Prci2g1273 662 MobiDBLite consensus disorder prediction 257 278 - -
Prci2g1273 662 SMART rav1_2 311 383 IPR001471 GO:0003700|GO:0006355
Prci2g1273 662 SMART rav1_2 413 477 IPR001471 GO:0003700|GO:0006355
Prci2g1273 662 MobiDBLite consensus disorder prediction 257 276 - -
Prci2g1273 662 Gene3D AP2/ERF domain 310 379 IPR036955 GO:0003700|GO:0006355
Prci2g1273 662 Gene3D AP2/ERF domain 413 473 IPR036955 GO:0003700|GO:0006355
Prci2g1273 662 MobiDBLite consensus disorder prediction 1 26 - -
Prci2g1273 662 MobiDBLite consensus disorder prediction 590 616 - -
Prci2g1273 662 ProSiteProfiles AP2/ERF domain profile. 413 471 IPR001471 GO:0003700|GO:0006355
Prci2g1273 662 PRINTS Ethylene responsive element binding protein signature 312 323 IPR001471 GO:0003700|GO:0006355
Prci2g1273 662 PRINTS Ethylene responsive element binding protein signature 453 473 IPR001471 GO:0003700|GO:0006355
Prci2g1273 662 MobiDBLite consensus disorder prediction 590 604 - -
Prci2g1273 662 Pfam AP2 domain 414 463 IPR001471 GO:0003700|GO:0006355
Prci2g1273 662 Pfam AP2 domain 311 369 IPR001471 GO:0003700|GO:0006355
Prci2g1273 662 SUPERFAMILY DNA-binding domain 310 379 IPR016177 GO:0003677
Prci2g1273 662 ProSiteProfiles AP2/ERF domain profile. 311 377 IPR001471 GO:0003700|GO:0006355
Prci2g1273 662 FunFam AP2-like ethylene-responsive transcription factor ANT 310 379 - -
Prci2g1273 662 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 199 542 - -
Prci2g1273 662 FunFam AP2-like ethylene-responsive transcription factor 412 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1273 Prci-Chr2 9545084 9549386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1273 11 498 AP2-EREBP Transcription Factor Family AT4G37750 52.703 3.28e-155 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci2g1273 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1273 K09285 - qsa:O6P43_015953 887.871