Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1260 ATGGGTCTTGCCGATATGTCTAACTCAGGCCTCGGGCTTGGTCTTGGTCTTGGTCTTCATCATCAGTCTGAGAATTGCCCCAGAGAAATCCGACAGAAGAAAGAGGATGATCAGTACAAATGTGACCAGAAGGCCGTATACCCGTCTCTTACCTTAGGACCGCCTGATGATCAAGAGGCGAATCAACAGCTTCTTCCAACAAAGACTGAATCTGTTCACTTCCATGCGATGGCCTCTTCTCCCAGCGCGGCTTCTTCGTTTTCTAACTCCTCCAGTATCAAAAGGGAGAATAAGGAGTTTGCCGGCGACGAGCTTGATTTGGAAGTCGAGAATAAGGTTAATCCTTCCAAGGTAGGTGCCGACGTAGACGAGGAGGGCAATCCCAGGAAGAAACTCAGGCTCTCCAAAGAACAATCTGCTGTTTTAGAGGACAGCTTCAAAGAGCACTCTACTCTAAATCCAAAGCAAAAGCAAGAATTGGCAAGGAAGCTAAACCTGCGTGCGAGACAAGTGGAAGTTTGGTTTCAAAACAGGAGAGCCAGGACAAAACTAAAACAAACGGAAGTTGACTGTGAGTTACTCAAGAAGTGCTGCGAAACGCTAACGGAAGAGAACAAGAGACTGCAAAAGGAGTTGCAAGAACTGAGATCAATAAAAACGACGTCGCAGGGACCCTTGTATATGCAGCTTCCGGCAGCCACCCTCACCTTGTGCCCTTCTTGTGAGAGAATTTGCGGCGGAGGCGGCGGCGCCACCACCAACGGCTCTCCTGCTGCCACCGTCTTCCTTACTGGATCAAAGGCCCATCACTTGTACAAAAGTAACTATCCATTCGCCCACTCGCCGGCAGCTTGCTAG 858 0.4942 MGLADMSNSGLGLGLGLGLHHQSENCPREIRQKKEDDQYKCDQKAVYPSLTLGPPDDQEANQQLLPTKTESVHFHAMASSPSAASSFSNSSSIKRENKEFAGDELDLEVENKVNPSKVGADVDEEGNPRKKLRLSKEQSAVLEDSFKEHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKELQELRSIKTTSQGPLYMQLPAATLTLCPSCERICGGGGGATTNGSPAATVFLTGSKAHHLYKSNYPFAHSPAAC 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1260 285 MobiDBLite consensus disorder prediction 24 42 - -
Prci2g1260 285 CDD homeodomain 128 186 IPR001356 GO:0003677
Prci2g1260 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 256 - -
Prci2g1260 285 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Prci2g1260 285 Gene3D - 122 190 - -
Prci2g1260 285 SMART halz 185 230 IPR003106 GO:0006355|GO:0043565
Prci2g1260 285 MobiDBLite consensus disorder prediction 110 132 - -
Prci2g1260 285 Pfam Homeobox associated leucine zipper 185 217 IPR003106 GO:0006355|GO:0043565
Prci2g1260 285 Coils Coil 191 221 - -
Prci2g1260 285 SUPERFAMILY Homeodomain-like 127 193 IPR009057 -
Prci2g1260 285 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Prci2g1260 285 MobiDBLite consensus disorder prediction 1 63 - -
Prci2g1260 285 SMART HOX_1 127 189 IPR001356 GO:0003677
Prci2g1260 285 FunFam Homeobox-leucine zipper protein 18 114 190 - -
Prci2g1260 285 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1260 Prci-Chr2 9373253 9374863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1260 1 244 Homeobox Transcription Factor Family AT4G37790 51.600 1.66e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci2g1260 Homeodomain 6.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1260 K09338 - gmx:100807072 311.612